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bio-cfdna-preprocessing

Preprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate removal using fgbio.

Skill by FreedomIntelligence

IndexedLicense unknown★ 3,080
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Install

Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.

npx agentmarket install skill/freedomintelligence-bio-cfdna-preprocessing

Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.

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About

Preprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate removal using fgbio. Applies cfDNA-specific quality thresholds and fragment length filtering. Use when processing plasma cfDNA sequencing data before downstream analysis.

Use cases: data

Reviews

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Permissions

What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.

Tools
No tools found
Secrets
None asked for
Install scripts
None found
Runs as
Python package

Network hosts it talks to 1

  • codeload.github.com · found in install command

Files it touches

  • ~/.claude/skills/bio-cfdna-preprocessing

What's inside

Skill name
bio-cfdna-preprocessing
Description
Preprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate removal using fgbio. Applies cfDNA-specific quality thresholds and fragment length filtering. Use when processing plasma cfDNA sequencing data before downstream analysis.
License
unknown
Instructions
195 lines in SKILL.md · view on GitHub

Before installing

  • Ships executable scripts
  • Instructions call the network

Files (3)

  • SKILL.md
  • preprocess_cfdna.py · examples/
  • usage-guide.md

The license isn't open source, so the instructions aren't shown here. Read SKILL.md on GitHub

More from FreedomIntelligence/OpenClaw-Medical-Skills

Signals

Stars
3,080
Forks
419
Open issues
9
Last commit (this folder)
Mar 8, 2026 (7 months ago)

From GitHub (fetched Oct 24, 2026).

Details

License
License unknown
Repository
github.com/FreedomIntelligence/OpenClaw-Medical-Skills
Website
biotender-max.github.io/awesome-bio-agent-skills/
First seen
Oct 24, 2026
Last checked
Oct 24, 2026
Source
GitHubgithub-graphql

Same skill elsewhere

Copies of this SKILL.md published by others; search shows only one of them.

More from FreedomIntelligence

Cite this page

bio-cfdna-preprocessing skill. Agent Mart. https://agentmart.dev/skills/freedomintelligence-bio-cfdna-preprocessing (last updated 2026-10-24)