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This entry duplicates bio-cfdna-preprocessing, which is the one we list in search.

bio-cfdna-preprocessing

Preprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate removal using fgbio.

Skill by BioTender-max

IndexedNOASSERTION★ 206
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Install

Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.

npx agentmarket install skill/biotender-max-bio-cfdna-preprocessing

Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.

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About

Preprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate removal using fgbio. Applies cfDNA-specific quality thresholds and fragment length filtering. Use when processing plasma cfDNA sequencing data before downstream analysis.

Use cases: data

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What's inside

Skill name
bio-cfdna-preprocessing
Description
Preprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate removal using fgbio. Applies cfDNA-specific quality thresholds and fragment length filtering. Use when processing plasma cfDNA sequencing data before downstream analysis.
License
NOASSERTION
Instructions
195 lines in SKILL.md · view on GitHub

Before installing

  • Ships executable scripts
  • Instructions call the network

Agent Skills spec issues

  • name: "bio-cfdna-preprocessing" does not match folder "cfdna-preprocessing"

Files (3)

  • SKILL.md
  • preprocess_cfdna.py · examples/
  • usage-guide.md

The license isn't open source, so the instructions aren't shown here. Read SKILL.md on GitHub

More from BioTender-max/awesome-bio-agent-skills

Signals

Stars
206
Forks
36
Open issues
1
Last commit (this folder)
May 25, 2026 (5 months ago)
Last release
Jul 1, 2026 (3 months ago)

From GitHub (fetched Oct 24, 2026).

Details

License
NOASSERTION
Repository
github.com/BioTender-max/awesome-bio-agent-skills
Website
biotender-max.github.io/awesome-bio-agent-skills/
First seen
Oct 24, 2026
Last checked
Oct 24, 2026
Source
GitHubgithub-graphql

Same skill elsewhere

Copies of this SKILL.md published by others; search shows only one of them.

More from BioTender-max

Cite this page

bio-cfdna-preprocessing skill. Agent Mart. https://agentmart.dev/skills/biotender-max-bio-cfdna-preprocessing (last updated 2026-10-24)