arboreto
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).
Skill by FreedomIntelligence
Install
Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.
npx agentmarket install skill/freedomintelligence-arboreto
Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.
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About
Use cases: data
Reviews
Write a reviewNo reviews yet. Installed it? Reviews come from verified installers only. How reviews work
Permissions
What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.
- Tools
- No tools found
- Secrets
- None asked for
- Install scripts
- None found
- Runs as
- Python package
Network hosts it talks to 1
codeload.github.com· found in install command
Files it touches
~/.claude/skills/arboreto
What's inside
- Skill name
arboreto- Description
- Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
- License
- unknown
- Instructions
- 234 lines in SKILL.md · view on GitHub
Before installing
- Ships executable scripts
Files (5)
- SKILL.md
- algorithms.md · references/
- basic_inference.md · references/
- distributed_computing.md · references/
- basic_grn_inference.py · scripts/
The license isn't open source, so the instructions aren't shown here. Read SKILL.md on GitHub
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Signals
- Stars
- 3,080
- Forks
- 419
- Open issues
- 9
- Last commit (this folder)
- Mar 8, 2026 (7 months ago)
From GitHub (fetched Oct 24, 2026).
Details
- License
- License unknown
- Website
- agent-skills-hub.github.io/
- First seen
- Oct 24, 2026
- Last checked
- Oct 24, 2026
- Source
- GitHubgithub-graphql
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Cite this page
arboreto skill. Agent Mart. https://agentmart.dev/skills/freedomintelligence-arboreto (last updated 2026-10-24)