arboreto
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).
Skill by tassiovale
Install
Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.
npx agentmarket install skill/tassiovale-arboreto
Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.
Get the weekly diff
The weekly diff: one email a week with new agent tools, notable updates and grade changes, plus security alerts for tools you follow. Double opt-in, one-click unsubscribe.
About
Use cases: data
Reviews
Write a reviewNo reviews yet. Installed it? Reviews come from verified installers only. How reviews work
Permissions: not checked yet.
What's inside
- Skill name
arboreto- Description
- Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
- License
- BSD-3-Clause license
- Metadata
- version: 1.0 · skill-author: K-Dense Inc.
- Instructions
- 260 lines in SKILL.md · view on GitHub
Before installing
- Ships executable scripts
Files (5)
- SKILL.md
- algorithms.md · references/
- basic_inference.md · references/
- distributed_computing.md · references/
- basic_grn_inference.py · scripts/
The license isn't open source, so the instructions aren't shown here. Read SKILL.md on GitHub
More from tassiovale/claude-code-kit
- 0.549score
esm
tassiovale
Use when working directly with the `esm` Python SDK, ESM3 or ESMC model IDs, Forge/Biohub inference clients, or ESMFold2 folding workflows.
SkillCFreshness: C★ 12Claude Code +9 - 0.549score
exa-search
tassiovale
Web toolkit powered by Exa, tuned for scientific and technical content.
SkillCFreshness: C★ 12Claude Code +9 - 0.545score
bulk-rnaseq
tassiovale
End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon…
SkillCFreshness: C★ 12Claude Code +9 - 0.542score
diffdock
tassiovale
DiffDock and DiffDock-L molecular docking.
SkillCFreshness: C★ 12Claude Code +9 - 0.540score
cellxgene-census
tassiovale
Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data.
SkillCFreshness: C★ 12Claude Code +9 - 0.535score
bids
tassiovale
Use this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET…
SkillCFreshness: C★ 12Claude Code +9 - 0.514score
algorithmic-art
tassiovale
Creating algorithmic art using p5.js with seeded randomness and interactive parameter exploration.
SkillCFreshness: C★ 12Claude Code +9 - 0.514score
brand-guidelines
tassiovale
Applies Anthropic's official brand colors and typography to any sort of artifact that may benefit from having Anthropic's look-and-feel.
SkillCFreshness: C★ 12Claude Code +9 - 0.514score
canvas-design
tassiovale
Create beautiful visual art in .png and .pdf documents using design philosophy.
SkillCFreshness: C★ 12Claude Code +9 - 0.514score
doc-coauthoring
tassiovale
Guide users through a structured workflow for co-authoring documentation.
SkillCFreshness: C★ 12Claude Code +9 - 0.513score
executing-plans
tassiovale
Use when you have a written implementation plan to execute in a separate session with review checkpoints
SkillCFreshness: C★ 12Claude Code +9
Signals
- Stars
- 12
- Forks
- 4
- Open issues
- 0
- Last commit (this folder)
- Jun 10, 2026 (4 months ago)
- Last release
- Jul 26, 2026 (3 months ago)
From GitHub (fetched Oct 24, 2026).
Details
- Version
- 1.0
- License
- BSD-3-Clause license
- Repository
- github.com/tassiovale/claude-code-kit
- First seen
- Oct 24, 2026
- Last checked
- Oct 24, 2026
- Source
- GitHubgithub-graphql
Same skill elsewhere
Copies of this SKILL.md published by others; search shows only one of them.
- 0.489score
arboreto
FreedomIntelligence
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).
SkillDFreshness: D★ 3.1KClaude Code +9 - 0.355score
arboreto
ccfwwm
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).
SkillAFreshness: A★ 1Claude Code +9 - 0.334score
arboreto
LUNARTECH-X
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).
SkillCFreshness: C★ 17Claude Code +9 - 0.320score
arboreto
shushuzn
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).
SkillCFreshness: C★ 5Claude Code +9 - 0.315score
arboreto
nikhilesh-s
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).
SkillBFreshness: BClaude Code +9 - 0.313score
arboreto
qinyan-ai
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).
SkillDFreshness: D★ 87Claude Code +9 - 0.306score
arboreto
ovachiever
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).
SkillDFreshness: D★ 55Claude Code +9 - 0.302score
arboreto
Zaoqu-Liu
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).
SkillDFreshness: D★ 60Claude Code +9 - 0.285score
arboreto
PROgram52bc
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).
SkillCFreshness: CClaude Code +9 - 0.269score
arboreto
lamm-mit
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).
SkillCFreshness: C★ 250Claude Code +9 - 0.269score
arboreto
mugpeng
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).
SkillDFreshness: D★ 2Claude Code +9 - 0.259score
arboreto
Vaishnav14220
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).
SkillDFreshness: D★ 1Claude Code +9
More from tassiovale
- 0.549score
esm
tassiovale
Use when working directly with the `esm` Python SDK, ESM3 or ESMC model IDs, Forge/Biohub inference clients, or ESMFold2 folding workflows.
SkillCFreshness: C★ 12Claude Code +9 - 0.549score
exa-search
tassiovale
Web toolkit powered by Exa, tuned for scientific and technical content.
SkillCFreshness: C★ 12Claude Code +9 - 0.545score
bulk-rnaseq
tassiovale
End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon…
SkillCFreshness: C★ 12Claude Code +9 - 0.542score
diffdock
tassiovale
DiffDock and DiffDock-L molecular docking.
SkillCFreshness: C★ 12Claude Code +9 - 0.540score
cellxgene-census
tassiovale
Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data.
SkillCFreshness: C★ 12Claude Code +9 - 0.535score
bids
tassiovale
Use this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET…
SkillCFreshness: C★ 12Claude Code +9
Cite this page
arboreto skill. Agent Mart. https://agentmart.dev/skills/tassiovale-arboreto (last updated 2026-10-24)