anndata
Data structure for annotated matrices in single-cell analysis.
Skill by tassiovale
Chalk Labs
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Install
Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.
npx agentmarket install skill/tassiovale-anndata
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About
Use cases: data
Reviews
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What's inside
- Skill name
anndata- Description
- Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
- License
- BSD-3-Clause license
- Compatibility
- Requires Python 3.11+ and uv. Examples target AnnData 0.12.16, with experimental APIs clearly marked where used.
- Allowed tools
- Read, Write, Edit, Bash
- Metadata
- version: 1.1 · skill-author: K-Dense Inc.
- Instructions
- 422 lines in SKILL.md · view on GitHub
Before installing
- Pre-approves any shell command
Files (6)
- SKILL.md
- best_practices.md · references/
- concatenation.md · references/
- data_structure.md · references/
- io_operations.md · references/
- manipulation.md · references/
The license isn't open source, so the instructions aren't shown here. Read SKILL.md on GitHub
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Signals
- Stars
- 12
- Forks
- 4
- Open issues
- 0
- Last commit (this folder)
- Jun 10, 2026 (4 months ago)
- Last release
- Jul 26, 2026 (3 months ago)
From GitHub (fetched Oct 24, 2026).
Details
- Version
- 1.1
- License
- BSD-3-Clause license
- Repository
- github.com/tassiovale/claude-code-kit
- First seen
- Oct 24, 2026
- Last checked
- Oct 24, 2026
- Source
- GitHubgithub-graphql
Same skill elsewhere
Copies of this SKILL.md published by others; search shows only one of them.
- 0.597score
anndata
mkurman
Data structure for annotated matrices in single-cell analysis.
SkillAFreshness: A★ 325Claude Code +9 - 0.355score
anndata
ccfwwm
Data structure for annotated matrices in single-cell analysis.
SkillAFreshness: A★ 1Claude Code +9 - 0.334score
anndata
LUNARTECH-X
Data structure for annotated matrices in single-cell analysis.
SkillCFreshness: C★ 17Claude Code +9 - 0.320score
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shushuzn
Data structure for annotated matrices in single-cell analysis.
SkillCFreshness: C★ 5Claude Code +9 - 0.315score
anndata
nikhilesh-s
Data structure for annotated matrices in single-cell analysis.
SkillBFreshness: BClaude Code +9 - 0.315score
anndata
Masterofowls
Data structure for annotated matrices in single-cell analysis.
SkillBFreshness: BClaude Code +9 - 0.313score
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qinyan-ai
Data structure for annotated matrices in single-cell analysis.
SkillDFreshness: D★ 87Claude Code +9 - 0.302score
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SkillDFreshness: D★ 60Claude Code +9 - 0.285score
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PROgram52bc
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SkillCFreshness: CClaude Code +9 - 0.269score
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lamm-mit
Data structure for annotated matrices in single-cell analysis.
SkillCFreshness: C★ 250Claude Code +9 - 0.269score
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Data structure for annotated matrices in single-cell analysis.
SkillDFreshness: D★ 2Claude Code +9 - 0.259score
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SkillDFreshness: D★ 1Claude Code +9
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SkillCFreshness: C★ 12Claude Code +9 - 0.549score
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tassiovale
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SkillCFreshness: C★ 12Claude Code +9 - 0.545score
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tassiovale
End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon…
SkillCFreshness: C★ 12Claude Code +9 - 0.542score
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Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data.
SkillCFreshness: C★ 12Claude Code +9 - 0.535score
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Cite this page
anndata skill. Agent Mart. https://agentmart.dev/skills/tassiovale-anndata (last updated 2026-10-24)