This entry duplicates anndata, which is the one we list in search.

anndata

Data structure for annotated matrices in single-cell analysis.

IndexedBSD-3-Clause license

Install

Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.

npx agentmarket install skill/nikhilesh-s-anndata

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About

Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.

Use cases: data

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What's inside

Skill name: anndata
Description: Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
License: BSD-3-Clause license
Compatibility: Requires Python 3.11+ and uv. Examples target AnnData 0.12.16, with experimental APIs clearly marked where used.
Allowed tools: Read, Write, Edit, Bash
Metadata: version: 1.1 · skill-author: K-Dense Inc.
Instructions: 422 lines in SKILL.md · view on GitHub

Before installing

Pre-approves any shell command

Files (6)

SKILL.md
best_practices.md · references/
concatenation.md · references/
data_structure.md · references/
io_operations.md · references/
manipulation.md · references/

The license isn't open source, so the instructions aren't shown here. Read SKILL.md on GitHub

Signals

Stars: 0
Forks: 0
Open issues: 0
Last commit (this folder): Aug 16, 2026 (2 months ago)

From GitHub (fetched Oct 24, 2026).

Details

Version: 1.1
License: BSD-3-Clause license
Repository: github.com/nikhilesh-s/claude-toolkit
First seen: Oct 24, 2026
Last checked: Oct 24, 2026
Source: GitHub github-graphql

Same skill elsewhere

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