scientific-visualization
Turn molecular and protein analysis results into declarative property charts and residue-level sequence tracks.
Skill by phenixace
Install
Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.
npx agentmarket install skill/phenixace-scientific-visualization
Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.
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About
Use cases: data, research
Reviews
Write a reviewNo reviews yet. Installed it? Reviews come from verified installers only. How reviews work
Permissions
What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.
- Tools
- No tools found
- Secrets
- None asked for
- Install scripts
- None found
- Runs as
- Python package
Network hosts it talks to 1
codeload.github.com· found in install command
Files it touches
~/.claude/skills/scientific-visualization
What's inside
- Skill name
scientific-visualization- Description
- Turn molecular and protein analysis results into declarative property charts and residue-level sequence tracks. Use when a visual comparison helps inspect computed evidence; do not encode unsupported conclusions in a chart.
- License
- MIT
- Instructions
- 7 lines in SKILL.md · view on GitHub
Before installing
- Ships executable scripts
Files (4)
- SKILL.md
- openai.yaml · agents/
- handler.py · scripts/
- skill.json
SKILL.md (first lines)
# Scientific Visualization Use `visualization_property_chart` for a small set of comparable numeric values. Use `visualization_sequence_track` to inspect residue-level hydropathy. Keep units and transformations explicit. Visualization artifacts contain data and rendering intent only; they do not contain executable HTML or scripts.
From phenixace/Molemo_WorkBench, MIT.
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protein-structure
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Retrieve experimental structures from RCSB PDB, predicted structures from AlphaFold DB, or parse PDB/mmCIF files in the local workspace.
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guided-workflows
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Create reviewable, researcher-approved plans from Molemo scientific tools.
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hmmer-profile-search
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Validate and run bounded local HMMER3 profile-to-protein searches with domain coordinates, explicit thresholds, researcher approval and auditable outputs.
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chembl-bioactivity
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Review source-linked ChEMBL small-molecule activity evidence for an exact UniProt single-protein target.
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sequence-search
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Search one concrete protein or nucleotide sequence against a FASTA database inside the local Molemo workspace with NCBI BLAST+.
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single-cell-analysis
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Validate local single-cell raw-count matrices and propose researcher-approved Scanpy QC, embedding, clustering, and marker exploration.
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clinical-trial-landscape
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Search ClinicalTrials.gov for a bounded trial landscape or review the posted tabular results of one exact NCT record.
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dna-variant-calling
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Preflight and run a bounded, researcher-approved paired-end short-read DNA alignment and candidate variant-calling workflow with local BWA, samtools, and…
SkillBFreshness: B★ 2Claude Code +9 - 0.554score
functional-analysis
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Review a bounded human gene set with Reactome pathway overrepresentation and STRING identifier mapping, enrichment, functional association networks, and PPI…
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geo-dataset-discovery
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Discover public NCBI GEO Series from a biological question with exact GSE-only query provenance, bounded metadata, study-design caveats, and an approved…
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geo-series-matrix-import
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Inspect and import one official NCBI GEO Series Matrix through a researcher-approved, bounded local workflow while preserving sample metadata, values and…
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Signals
- Stars
- 2
- Forks
- 0
- Open issues
- 0
- Last commit (this folder)
- Aug 29, 2026 (2 months ago)
From GitHub (fetched Oct 24, 2026).
Details
- License
- MIT
- Repository
- github.com/phenixace/Molemo_WorkBench
- First seen
- Oct 24, 2026
- Last checked
- Oct 24, 2026
- Source
- GitHubgithub-graphql
More from phenixace
- 0.557score
guided-workflows
phenixace
Create reviewable, researcher-approved plans from Molemo scientific tools.
SkillBFreshness: B★ 2Claude Code +9 - 0.557score
chembl-bioactivity
phenixace
Review source-linked ChEMBL small-molecule activity evidence for an exact UniProt single-protein target.
SkillBFreshness: B★ 2Claude Code +9 - 0.557score
hmmer-profile-search
phenixace
Validate and run bounded local HMMER3 profile-to-protein searches with domain coordinates, explicit thresholds, researcher approval and auditable outputs.
SkillBFreshness: B★ 2Claude Code +9 - 0.557score
research-router
phenixace
Route broad life-science research questions to the smallest useful set of Molemo skills.
SkillBFreshness: B★ 2Claude Code +9 - 0.557score
protein-structure
phenixace
Retrieve experimental structures from RCSB PDB, predicted structures from AlphaFold DB, or parse PDB/mmCIF files in the local workspace.
SkillBFreshness: B★ 2Claude Code +9 - 0.554score
ngs-qc
phenixace
Run deterministic FASTQ quality control on a file inside the constrained local workspace.
SkillBFreshness: B★ 2Claude Code +9
Cite this page
scientific-visualization skill. Agent Mart. https://agentmart.dev/skills/phenixace-scientific-visualization (last updated 2026-10-24)