ngs-qc
Run deterministic FASTQ quality control on a file inside the constrained local workspace.
Skill by phenixace
Install
Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.
npx agentmarket install skill/phenixace-ngs-qc
Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.
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About
Use cases: writing
Reviews
Write a reviewNo reviews yet. Installed it? Reviews come from verified installers only. How reviews work
Permissions
What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.
- Tools
- No tools found
- Secrets
- None asked for
- Install scripts
- None found
- Runs as
- Python package
Network hosts it talks to 1
codeload.github.com· found in install command
Files it touches
~/.claude/skills/ngs-qc
What's inside
- Skill name
ngs-qc- Description
- Run deterministic FASTQ quality control on a file inside the constrained local workspace. Use for read counts, length, GC, N content, Phred quality, Q20/Q30, and per-cycle diagnostics before downstream sequencing analysis.
- License
- MIT
- Instructions
- 7 lines in SKILL.md · view on GitHub
Before installing
- Ships executable scripts
Files (4)
- SKILL.md
- openai.yaml · agents/
- handler.py · scripts/
- skill.json
SKILL.md (first lines)
# NGS QC Use `ngs_fastq_qc` only after a `.fastq` or `.fq` file has been imported into the workspace. Report whether the result is sampled, the number of reads inspected, and any low-quality cycles. This skill performs local quality control. It does not align reads, call variants, quantify transcripts, or establish biological differential expression.
From phenixace/Molemo_WorkBench, MIT.
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Signals
- Stars
- 2
- Forks
- 0
- Open issues
- 0
- Last commit (this folder)
- Aug 29, 2026 (2 months ago)
From GitHub (fetched Oct 24, 2026).
Details
- License
- MIT
- Repository
- github.com/phenixace/Molemo_WorkBench
- First seen
- Oct 24, 2026
- Last checked
- Oct 24, 2026
- Source
- GitHubgithub-graphql
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Turn molecular and protein analysis results into declarative property charts and residue-level sequence tracks.
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hmmer-profile-search
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Validate and run bounded local HMMER3 profile-to-protein searches with domain coordinates, explicit thresholds, researcher approval and auditable outputs.
SkillBFreshness: B★ 2Claude Code +9 - 0.557score
protein-structure
phenixace
Retrieve experimental structures from RCSB PDB, predicted structures from AlphaFold DB, or parse PDB/mmCIF files in the local workspace.
SkillBFreshness: B★ 2Claude Code +9 - 0.557score
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Review source-linked ChEMBL small-molecule activity evidence for an exact UniProt single-protein target.
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Create reviewable, researcher-approved plans from Molemo scientific tools.
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Cite this page
ngs-qc skill. Agent Mart. https://agentmart.dev/skills/phenixace-ngs-qc (last updated 2026-10-24)