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bio-read-qc-umi-processing

Extract, process, and deduplicate reads using Unique Molecular Identifiers (UMIs) with umi_tools.

Skill by FreedomIntelligence

IndexedLicense unknown★ 3,080
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Install

Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.

npx agentmarket install skill/freedomintelligence-bio-read-qc-umi-processing

Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.

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About

Extract, process, and deduplicate reads using Unique Molecular Identifiers (UMIs) with umi_tools. Use when library prep includes UMIs and accurate molecule counting is needed, such as in single-cell RNA-seq, low-input RNA-seq, or targeted sequencing to distinguish PCR from biological duplicates.

Reviews

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Permissions

What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.

Tools
No tools found
Secrets
None asked for
Install scripts
None found
Runs as
Shell scripts

Network hosts it talks to 1

  • codeload.github.com · found in install command

Files it touches

  • ~/.claude/skills/bio-read-qc-umi-processing

What's inside

Skill name
bio-read-qc-umi-processing
Description
Extract, process, and deduplicate reads using Unique Molecular Identifiers (UMIs) with umi_tools. Use when library prep includes UMIs and accurate molecule counting is needed, such as in single-cell RNA-seq, low-input RNA-seq, or targeted sequencing to distinguish PCR from biological duplicates.
License
unknown
Instructions
386 lines in SKILL.md · view on GitHub

Before installing

  • Ships executable scripts

Files (3)

  • SKILL.md
  • umi_workflow.sh · examples/
  • usage-guide.md

The license isn't open source, so the instructions aren't shown here. Read SKILL.md on GitHub

More from FreedomIntelligence/OpenClaw-Medical-Skills

Signals

Stars
3,080
Forks
419
Open issues
9
Last commit (this folder)
Mar 8, 2026 (7 months ago)

From GitHub (fetched Oct 24, 2026).

Details

License
License unknown
Repository
github.com/FreedomIntelligence/OpenClaw-Medical-Skills
First seen
Oct 24, 2026
Last checked
Oct 24, 2026
Source
GitHubgithub-graphql

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Cite this page

bio-read-qc-umi-processing skill. Agent Mart. https://agentmart.dev/skills/freedomintelligence-bio-read-qc-umi-processing (last updated 2026-10-24)