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Best agent skills for PubMed

We found 64 agent skills for PubMed in the catalog; these are the 15 that rank highest. The order comes from our rank, which weighs adoption, freshness, documentation and publisher identity. Nobody can pay for a place on this list. lit-synthesizer, article-data-fetcher and author-strategy lead it. literature-review comes from the largest repository here (54,411 stars). 10 of the 15 had activity in the last 30 days. Each entry lists why it made the list and links to its install page.

Updated Oct 26, 2026 · Built from catalog data; how we rank and grade

Top 15 of 64

  1. 1
    lit-synthesizer

    Sooraj (github.com/sooraj-codes)

    Search PubMed and bioRxiv for bioinformatics literature, synthesise results into a structured report, and build a citation graph — all locally, with a…

    • Repository has 1.2K stars
    • Active in the last 30 days
    • Open source (MIT)

    ★ 1.2KLast active Oct 20, 2026Claude Code, Claude apps, Codex, Cursor +6

  2. 2
    article-data-fetcher

    ClawBio

    Given an article DOI or PubMed ID, discover and download the genomics data files deposited by the authors (VCF, FASTA, H5AD, CSV, JSON, BAM, etc.) from public…

    • Repository has 1.2K stars
    • Active in the last 30 days
    • Open source (MIT)

    ★ 1.2KLast active Oct 11, 2026Claude Code, Claude apps, Codex, Cursor +6

  3. 3
    author-strategy

    Aperivue

    Use when analyzing a researcher's publication record from PubMed.

    • Active in the last 30 days
    • Open source (MIT)
    • Ships helper scripts

    ★ 349Last active Oct 4, 2026Claude Code, Claude apps, Codex, Cursor +6

  4. 4
    pubmed-summariser

    ClawBio contributors

    Search PubMed, preserve complete abstracts and sections, and produce research briefings with abstract openings or optional OpenAI/Ollama summaries.

    • Repository has 1.2K stars
    • Open source (MIT)
    • Ships helper scripts

    ★ 1.2KLast active Sep 11, 2026Claude Code, Claude apps, Codex, Cursor +6

  5. 5
    literature-review

    K-Dense-AI

    Conducts systematic, scoping, and narrative literature reviews using PubMed, arXiv, bioRxiv, Semantic Scholar, and other appropriate sources.

    • Largest repository here (54,411 stars)
    • Active in the last 30 days
    • Open source (MIT)

    ★ 54.4KLast active Oct 1, 2026Claude Code, Claude apps, Codex, Cursor +6

  6. 6
    general-chemical-literature

    learningmatter-mit

    Retrieve extensive literature (PubMed) and patent associated with a specific chemical compound via PubChem.

    • Active in the last 30 days
    • Open source (MIT)
    • Ships helper scripts

    ★ 183Last active Oct 6, 2026Claude Code, Claude apps, Codex, Cursor +6

  7. 7
    pubmed-cli

    drpedapati

    Search PubMed, fetch article metadata, traverse citation graphs, and look up MeSH terms from the command line.

    • Active in the last 30 days

    ★ 89Last active Oct 23, 2026Claude Code, Claude apps, Codex, Cursor +6

  8. 8
    pubmed-database

    foryourhealth111-pixel

    Direct REST API access to PubMed.

    • Repository has 3.8K stars
    • Active in the last 30 days
    • Open source (Apache-2.0)

    ★ 3.8KLast active Oct 18, 2026Claude Code, Claude apps, Codex, Cursor +6

  9. 9
    bioc-fulltext-fetch

    EthanYoQ

    给定 PMID/PMCID 取结构化全文（NLM BioC XML/JSON）。封装 BioC PubMed（标题+摘要）和 BioC PMC OA（开放获取全文）端点，输出按章节切分的段落、表格上下文、RAG 友好 chunk，适合大批量入向量库。Fetches structured fulltext from…

    • Open source (MIT)

    ★ 11Last active Sep 19, 2026Claude Code, Claude apps, Codex, Cursor +6

  10. 10
    clinical-trials

    mkurman

    ClinicalTrials.gov API client and analysis toolkit.

    • Active in the last 30 days
    • Open source (MIT)

    ★ 325Last active Oct 23, 2026Claude Code, Claude apps, Codex, Cursor +6

  11. 11
    bioc-fulltext-fetch

    EthanYoQ

    给定 PMID / PMCID 取结构化全文（BioC XML/JSON）。封装 NLM BioC PubMed API（标题+摘要）和 BioC PMC OA API（开放获取全文），输出按章节切分的段落、表格上下文、RAG 友好 chunk。适合大批量入向量库。触发词：全文抽取 / BioC / RAG 入库…

    • Open source (MIT)

    ★ 11Last active Sep 19, 2026Claude Code, Claude apps, Codex, Cursor +6

  12. 12
    review-literature-evidence

    marcorusc

    Reviews PubMed evidence for biological interactions and model assumptions using an explicit evidence matrix.

    • Active in the last 30 days

    ★ 1Last active Oct 22, 2026Claude Code, Claude apps, Codex, Cursor +6

  13. 13
    litreview

    SaiRam-Muppalla

    Academic literature orientation skill that searches papers via free keyless APIs (PubMed E-utilities + OpenAlex) by default — with the Consensus MCP as an…

    • Active in the last 30 days
    • Open source (MIT)
    • Ships helper scripts

    Last active Oct 20, 2026Claude Code, Claude apps, Codex, Cursor +6

  14. 14
    sequence-search

    phenixace

    Search one concrete protein or nucleotide sequence against a FASTA database inside the local Molemo workspace with NCBI BLAST+.

    • Open source (MIT)
    • Ships helper scripts
    • For Python

    ★ 2Last active Aug 29, 2026Claude Code, Claude apps, Codex, Cursor +6

  15. 15
    clinical-trial-landscape

    phenixace

    Search ClinicalTrials.gov for a bounded trial landscape or review the posted tabular results of one exact NCT record.

    • Open source (MIT)
    • Ships helper scripts
    • For Python

    ★ 2Last active Aug 29, 2026Claude Code, Claude apps, Codex, Cursor +6

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