Skip to content
Agentmart
Submit a tool

Alternatives to article-data-fetcher

article-data-fetcher is an agent skill by ClawBio: Given an article DOI or PubMed ID, discover and download the genomics data files deposited by the authors (VCF, FASTA, H5AD, CSV, JSON, BAM, etc.) from public…. If it doesn't fit your setup, these 12 agent skills cover similar ground. They are ordered by how closely they match article-data-fetcher and by our rank, which weighs adoption, freshness and documentation; money never changes the order. complexa-target leads the list (larger repository (3.7K stars)). Each entry shows data reasons to switch, and you can open a side-by-side comparison with article-data-fetcher.

Updated Oct 26, 2026 · Built from catalog data; how we rank and grade

You're replacing

article-data-fetcher

Given an article DOI or PubMed ID, discover and download the genomics data files deposited by the authors (VCF, FASTA, H5AD, CSV, JSON, BAM, etc.) from public…

12 alternatives

Ordered by how closely each matches article-data-fetcher (shared product, category or stated alternative) and by rank.

  1. 1
    complexa-target

    Ohad Mosafi <omosafi@nvidia.com>

    Add, edit, inspect, or validate Proteina-Complexa target definitions for protein binders, ligand binders, and AME motif scaffolding.

    • Larger repository (3.7K stars)

    ★ 3.7KLast active Oct 21, 2026Claude Code, Claude apps, Codex, Cursor +6

  2. 2
    arrayexpress-fetch

    Nikolai Hecker, UK Dementia Research Institute

    Query metadata and download data from ArrayExpress, EMBL-EBI's functional genomics collection, now hosted inside BioStudies.

    • Repository has 1.2K stars
    • Active in the last 30 days

    ★ 1.2KLast active Oct 2, 2026Claude Code, Claude apps, Codex, Cursor +6

  3. 3
    lit-synthesizer

    Sooraj (github.com/sooraj-codes)

    Search PubMed and bioRxiv for bioinformatics literature, synthesise results into a structured report, and build a citation graph — all locally, with a…

    • Repository has 1.2K stars
    • Active in the last 30 days

    ★ 1.2KLast active Oct 20, 2026Claude Code, Claude apps, Codex, Cursor +6

  4. 4
    nvmolkit-usage

    Kevin Boyd (@scal444)

    Use when writing or debugging nvMolKit Python code for GPU-accelerated RDKit fingerprints, similarity, conformers, clustering, and molecular searches.

    • Larger repository (3.7K stars)

    ★ 3.7KLast active Sep 23, 2026Claude Code, Claude apps, Codex, Cursor +6

  5. 5
    scrna-orchestrator

    Yonghao Zhao

    Local Scanpy pipeline for single-cell RNA-seq QC, optional doublet detection, clustering, marker discovery, optional CellTypist annotation, optional latent…

    • Repository has 1.2K stars
    • Open source (MIT)

    ★ 1.2KLast active Sep 11, 2026Claude Code, Claude apps, Codex, Cursor +6

  6. 6
    analyze-fasta

    Santiago Rodriguez Salinas

    Analyze a single FASTA file (nucleotide or protein), compute sequence-level metrics (GC, ORFs, MW, pI, GRAVY, secondary-structure fractions) with Biopython…

    • Repository has 1.2K stars
    • Open source (MIT)

    ★ 1.2KLast active Sep 17, 2026Claude Code, Claude apps, Codex, Cursor +6

  7. 7
    repro-enforcer

    ClawBio

    Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline.

    • Repository has 1.2K stars
    • Open source (MIT)

    ★ 1.2KLast active Sep 11, 2026Claude Code, Claude apps, Codex, Cursor +6

  8. 8
    rfd4-proteina-nim

    NVIDIA BioNeMo <bionemofeedback@nvidia.com>

    Run RFD4-Proteina NIM for joint protein structure and sequence design, conditioned generation, and reward-guided search using the NVIDIA hosted API or a…

    • Larger repository (3.7K stars)

    ★ 3.7KLast active Oct 21, 2026Claude Code

  9. 9
    polars-bio

    ClawBio (adapted from K-Dense scientific-agent-skills/polars-bio)

    Fast genomic interval operations (overlap, nearest, merge, coverage, cluster, complement, subtract, count-overlaps), multi-format bioinformatics I/O…

    • Repository has 1.2K stars
    • Active in the last 30 days

    ★ 1.2KLast active Sep 25, 2026Claude Code, Claude apps, Codex, Cursor +6

  10. 10
    ukb-ppp-region-fetch

    ClawBio

    Fetch a regional slice of plasma pQTL summary statistics from the UK Biobank Pharma Proteomics Project (UKB-PPP; Sun 2023 Nature) for a specific (protein…

    • Repository has 1.2K stars
    • Active in the last 30 days

    ★ 1.2KLast active Oct 22, 2026Claude Code, Claude apps, Codex, Cursor +6

  11. 11
    rare-high-impact-variants

    Manuel Corpas

    Count rare, high-impact loss-of-function variants carried in a VCF, annotated with molecular consequence and population allele frequency

    • Repository has 1.2K stars
    • Active in the last 30 days

    ★ 1.2KLast active Oct 19, 2026Claude Code, Claude apps, Codex, Cursor +6

  12. 12
    organ-aging-studio

    ClawBio hackathon contributor

    Interactive Goeminne proteomic aging clock with organ filters and per-protein contribution breakdown (protein NPX × coefficient).

    • Repository has 1.2K stars
    • Active in the last 30 days

    ★ 1.2KLast active Oct 19, 2026Claude Code, Claude apps, Codex, Cursor +6

Related