borzoi

Use Borzoi-style regulatory genomics models for sequence-to-expression or variant-effect analysis.

IndexedMIT

Install

Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.

npx agentmarket install skill/paramjani21-borzoi

Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.

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About

Use Borzoi-style regulatory genomics models for sequence-to-expression or variant-effect analysis. Use when the task asks for noncoding variant impact, regulatory sequence design, or expression prediction.

Use cases: design, productivity

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Permissions

What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.

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Network hosts it talks to 1

codeload.github.com · found in install command

Files it touches

~/.claude/skills/borzoi

What's inside

Skill name: borzoi
Description: Use Borzoi-style regulatory genomics models for sequence-to-expression or variant-effect analysis. Use when the task asks for noncoding variant impact, regulatory sequence design, or expression prediction.
License: MIT
Instructions: 15 lines in SKILL.md · view on GitHub

Files (1)

SKILL.md

SKILL.md (first lines)

# Borzoi

Use this skill for regulatory genomics modeling around sequence, variant, and expression effects.

Workflow:

1. Pin genome build, interval coordinates, reference/alternate alleles, cell type or tissue, strand, and window size.
2. Confirm the model route: local checkpoint, managed endpoint, notebook package, or external documented service. Record missing checkpoints as setup work, not as a completed model run.
3. Build input FASTA/variant manifests with source URLs or accession IDs.
4. Save prediction arrays, summary tables, plots, model version, and runtime metadata as Feynman artifacts.
5. Compare predicted effects against GTEx, ENCODE, literature, or other source-backed evidence when available.

Keep source-owned genomic coordinates separate from model-owned effect predictions in every output.

From ParamJani21/feynman, MIT.

Signals

Stars: 0
Forks: 0
Open issues: 0
Last commit (this folder): Jul 5, 2026 (3 months ago)

From GitHub (fetched Oct 24, 2026).

Details

License: MIT
Repository: github.com/ParamJani21/feynman
First seen: Oct 24, 2026
Last checked: Oct 24, 2026
Source: GitHub github-graphql

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Cite this page

borzoi skill. Agent Mart. https://agentmart.dev/skills/paramjani21-borzoi (last updated 2026-10-24)