provenance-and-audit
SHA-256 hashes, environment snapshot, and activity-aware Methods text.
Skill by HERRY423
Chalk Labs
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Install
Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.
npx agentmarket install skill/herry423-provenance-and-audit-50f2ed
Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.
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About
Use cases: security
Reviews
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What's inside
- Skill name
provenance-and-audit- Description
- SHA-256 hashes, environment snapshot, and activity-aware Methods text. Use to attach a reproducibility sidecar to an analysis. Do not use for 21 CFR Part 11, GxP, ALCOA+, or CLIA audit claims.
- License
- Apache-2.0
- Instructions
- 5 lines in SKILL.md · view on GitHub
Before installing
- Ships executable scripts
Files (4)
- SKILL.md
- _common.py · scripts/
- methods_generator.py · scripts/
- provenance_tracker.py · scripts/
SKILL.md (first lines)
# Provenance sidecar Prefer `bionexus.provenance.sidecar` from the shared kernel. The skill scripts wrap the same functions. Methods text is generated from the activity name and recorded parameters; it will not invent an scRNA-seq paragraph for a docking job.
From HERRY423/BioNexus, Apache-2.0.
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single-cell-rna-qc
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scverse scRNA gold chain on .h5ad/.h5 — inspect, convert, MAD QC, optional scanpy.pp.scrublet, preprocess, Harmony/ComBat, PCA-UMAP-Leiden, Wilcoxon markers…
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spatial-transcriptomics
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squidpy spatial gold chain on SpatialData .zarr or AnnData .h5ad with obsm['spatial'].
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external-evidence-audit
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Audit completed results from literature, database, analysis, sequence, structure, or slide capabilities, then optionally assemble an explicitly adjudicated…
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nextflow-development
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Prepare nf-core samplesheets, cluster nextflow.config, and write launch artifacts.
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scvi-tools
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Train official scvi-tools models (scVI/scANVI/totalVI/PeakVI/MultiVI/veloVI) on raw counts after the scRNA gold chain.
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start
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Orient a session on this plugin.
SkillBFreshness: B★ 31Claude Code +9 - 0.608score
provenance-and-audit
HERRY423
SHA-256 hashes, environment snapshot, and activity-aware Methods text.
SkillBFreshness: B★ 31Claude Code +9 - 0.608score
single-cell-de-audit
HERRY423
Review completed multi-donor single-cell differential expression before submission.
SkillBFreshness: B★ 31Claude Code +9
Signals
- Stars
- 31
- Forks
- 4
- Open issues
- 9
- Last commit (this folder)
- Aug 15, 2026 (2 months ago)
- Last release
- Aug 18, 2026 (2 months ago)
From GitHub (fetched Oct 24, 2026).
Details
- License
- Apache-2.0
- Repository
- github.com/HERRY423/BioNexus
- First seen
- Oct 24, 2026
- Last checked
- Oct 24, 2026
- Source
- GitHubgithub-graphql
Same skill elsewhere
Copies of this SKILL.md published by others; search shows only one of them.
More from HERRY423
- 0.616score
instrument-data-to-allotrope
HERRY423
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV using native allotropy or…
SkillBFreshness: B★ 31Claude Code +9 - 0.616score
single-cell-rna-qc
HERRY423
scverse scRNA gold chain on .h5ad/.h5 — inspect, convert, MAD QC, optional scanpy.pp.scrublet, preprocess, Harmony/ComBat, PCA-UMAP-Leiden, Wilcoxon markers…
SkillBFreshness: B★ 31Claude Code +9 - 0.616score
spatial-transcriptomics
HERRY423
squidpy spatial gold chain on SpatialData .zarr or AnnData .h5ad with obsm['spatial'].
SkillBFreshness: B★ 31Claude Code +9 - 0.613score
external-evidence-audit
HERRY423
Audit completed results from literature, database, analysis, sequence, structure, or slide capabilities, then optionally assemble an explicitly adjudicated…
SkillBFreshness: B★ 31Claude Code +9 - 0.613score
nextflow-development
HERRY423
Prepare nf-core samplesheets, cluster nextflow.config, and write launch artifacts.
SkillBFreshness: B★ 31Claude Code +9 - 0.613score
scvi-tools
HERRY423
Train official scvi-tools models (scVI/scANVI/totalVI/PeakVI/MultiVI/veloVI) on raw counts after the scRNA gold chain.
SkillBFreshness: B★ 31Claude Code +9
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Rahil Jain, Co-founder, Chalk Labs. Ex-Goldman Sachs engineer. You talk to the person who builds it.
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Cite this page
provenance-and-audit skill. Agent Mart. https://agentmart.dev/skills/herry423-provenance-and-audit-50f2ed (last updated 2026-10-24)