provenance-and-audit
SHA-256 hashes, environment snapshot, and activity-aware Methods text.
Skill by HERRY423
Install
Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.
npx agentmarket install skill/herry423-provenance-and-audit
Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.
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About
Use cases: security
Reviews
Write a reviewNo reviews yet. Installed it? Reviews come from verified installers only. How reviews work
Permissions
What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.
- Tools
- No tools found
- Secrets
- None asked for
- Install scripts
- None found
- Runs as
- Python package
Network hosts it talks to 1
codeload.github.com· found in install command
Files it touches
~/.claude/skills/provenance-and-audit
What's inside
- Skill name
provenance-and-audit- Description
- SHA-256 hashes, environment snapshot, and activity-aware Methods text. Use to attach a reproducibility sidecar to an analysis. Do not use for 21 CFR Part 11, GxP, ALCOA+, or CLIA audit claims.
- License
- Apache-2.0
- Instructions
- 5 lines in SKILL.md · view on GitHub
Before installing
- Ships executable scripts
Files (4)
- SKILL.md
- _common.py · scripts/
- methods_generator.py · scripts/
- provenance_tracker.py · scripts/
SKILL.md (first lines)
# Provenance sidecar Prefer `bionexus.provenance.sidecar` from the shared kernel. The skill scripts wrap the same functions. Methods text is generated from the activity name and recorded parameters; it will not invent an scRNA-seq paragraph for a docking job.
From HERRY423/BioNexus, Apache-2.0.
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scverse scRNA gold chain on .h5ad/.h5 — inspect, convert, MAD QC, optional scanpy.pp.scrublet, preprocess, Harmony/ComBat, PCA-UMAP-Leiden, Wilcoxon markers…
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squidpy spatial gold chain on SpatialData .zarr or AnnData .h5ad with obsm['spatial'].
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external-evidence-audit
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Audit completed results from literature, database, analysis, sequence, structure, or slide capabilities, then optionally assemble an explicitly adjudicated…
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Prepare nf-core samplesheets, cluster nextflow.config, and write launch artifacts.
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scvi-tools
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Train official scvi-tools models (scVI/scANVI/totalVI/PeakVI/MultiVI/veloVI) on raw counts after the scRNA gold chain.
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start
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Orient a session on this plugin.
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single-cell-de-audit
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Review completed multi-donor single-cell differential expression before submission.
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Signals
- Stars
- 31
- Forks
- 4
- Open issues
- 9
- Last commit (this folder)
- Aug 15, 2026 (2 months ago)
- Last release
- Aug 18, 2026 (2 months ago)
From GitHub (fetched Oct 24, 2026).
Details
- License
- Apache-2.0
- Repository
- github.com/HERRY423/BioNexus
- First seen
- Oct 24, 2026
- Last checked
- Oct 24, 2026
- Source
- GitHubgithub-graphql
Same skill elsewhere
Copies of this SKILL.md published by others; search shows only one of them.
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Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV using native allotropy or…
SkillBFreshness: B★ 31Claude Code +9 - 0.616score
single-cell-rna-qc
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scverse scRNA gold chain on .h5ad/.h5 — inspect, convert, MAD QC, optional scanpy.pp.scrublet, preprocess, Harmony/ComBat, PCA-UMAP-Leiden, Wilcoxon markers…
SkillBFreshness: B★ 31Claude Code +9 - 0.616score
spatial-transcriptomics
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squidpy spatial gold chain on SpatialData .zarr or AnnData .h5ad with obsm['spatial'].
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Audit completed results from literature, database, analysis, sequence, structure, or slide capabilities, then optionally assemble an explicitly adjudicated…
SkillBFreshness: B★ 31Claude Code +9 - 0.613score
nextflow-development
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Prepare nf-core samplesheets, cluster nextflow.config, and write launch artifacts.
SkillBFreshness: B★ 31Claude Code +9 - 0.613score
scvi-tools
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Train official scvi-tools models (scVI/scANVI/totalVI/PeakVI/MultiVI/veloVI) on raw counts after the scRNA gold chain.
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Cite this page
provenance-and-audit skill. Agent Mart. https://agentmart.dev/skills/herry423-provenance-and-audit (last updated 2026-10-24)