Data

Deep learning framework (PyTorch Lightning / lightning package).

Performs Scanpy single-cell RNA-seq QC, normalization, HVG selection, PCA/UMAP/t-SNE, clustering, exploratory marker ranking, pseudobulk preparation…

Creates and audits truthful, accessible, publication-ready scientific figures with Matplotlib, Seaborn, or Plotly.

Guided statistical analysis for research data - test selection, assumption checking, effect sizes, power analysis, Bayesian alternatives, and APA-formatted…

Calculates sample sizes and statistical power for study planning.

Supports work with Outpost Bio's open microbiome foundation models - the Waypoint checkpoints (Waypoint-6m, Waypoint-45m, Waypoint-170m), the Atlas…

Discover Google Cloud resource telemetry and effective Org Policies, evaluate brownfield workloads against sovereign data boundary and compliance standards…

Acts as a Data Boundary Compliance Analyst that maps user compliance queries against Data Boundary Frameworks and cloud controls, validates matched resources…

Translates SQL queries, DDL schemas, and stored procedures from legacy database dialects (Teradata, Oracle, Redshift, Snowflake, SparkSQL, HiveQL) to BigQuery…

Generates Cloud Monitoring Server-Driven UI (SDUI) Widget and XyChart Protocol Buffer textprotos on Google Cloud from resolved PromQL or ListTimeSeries queries.

Generate deterministic publication-quality architecture, workflow, and pipeline diagrams from structured JSON (FigureSpec) into editable SVG.

DEFAULT poster pipeline — build an academic conference poster (ICML/NeurIPS/ICLR/CVPR/...) as a single HTML/CSS file with measurement-driven hard gates, real…

AI creative director with recursive self-assessment.

Infers candidate gene regulatory networks from bulk or single-cell expression data using AertsLab Arboreto GRNBoost2 and GENIE3.

Provides a Python interface to bioinformatics services including UniProt, KEGG, ChEMBL, Reactome, QuickGO, and UniChem.

NGS analysis toolkit.

Builds and operates reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, dxCompiler, and Nextflow.

Guidance and local audit tools for Python workflows that directly use GeoPandas GeoSeries, GeoDataFrame, spatial operations, or vector-data I/O.

Converts heterogeneous documents and selected URIs to Markdown with Microsoft MarkItDown for text analysis, search, and LLM/RAG ingestion.

Builds, reviews, migrates, and plans MATLAB or GNU Octave numerical workflows.

Performs bulk RNA-seq differential expression analysis with PyDESeq2, including count validation, formula designs, explicit contrasts, Wald tests, FDR…

Reads, inspects, writes, transforms, and preflights local DICOM datasets and pixel data.

Analyzes, validates, converts, and transforms materials structures and computed materials data with pymatgen.

Builds and checks Bayesian models with PyMC, including hierarchical models, NUTS MCMC, variational inference, mutable-data predictions, posterior predictive…