Data

Build or modify an in-package HTML data app for a Malloy Publisher package (a public/ directory the package serves): design it, write its Publisher.query…

Build semantic models with Malloy for the Malloy Publisher.

Read before writing or debugging a Malloy query.

Wallet tracking and monitoring on Binance Web3.

Download genomes, genes, virus sequences, and taxonomy data from NCBI using the datasets and dataformat CLI tools.

Parse and analyze CSV data

Pipeline orchestrator that classifies incoming coding tasks and routes them through the correct combination of skills at the right depth.

Phase 11 procedure — capabilities → set_strategy_inputs → plan → apply → approve, plus 3-path blocker resolution (ask / build / defer).

Launch the interactive web dashboard to visualize a codebase's knowledge graph

Route and coordinate an end-to-end design-award workflow across winner research, evidence-based evaluation, award matching, entry-text preparation, and final…

Renamed to malloy-reports.

Renamed to malloy-reports.

Automated sequencing quality control and advanced visualization wrapping FastQC, MultiQC, and custom chart generation.

Extract numerical data from scientific figure images using Claude vision + OpenCV calibration.

Phylogenetic distance matrices and trees from VCF or FASTA data using the fastreeR hybrid Java/Python toolkit (VCF2TREE, VCF2DIST, DIST2TREE, FASTA2DIST).

Predict gene and transcript structure (intervals, exons, strand) from a DNA sequence using the Genomic Intelligence DNA Annotation model, via the hosted…

End-to-end GWAS automation wrapping PLINK2 for genotype QC and REGENIE for two-step whole-genome regression association testing.

Differential expression analysis for label-free quantitative (LFQ) intensity data with standard MaxQuant and DIA-NN output.

Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline.

NGS read QC, alignment, and BAM processing pipeline.

Semantic search across UK Biobank's 12,000+ data fields and publications — find the right variables for your research question.

Reusable reporting contract for any agent that hands work back to the pipeline.

Decomposition methodology for pm agent — turns an approved ARCH document into a Beads task list with explicit dependencies, time-boxes, and acceptance criteria.

Reusable writing-style contract for agent outputs (reports, ARCH docs, verdicts, threat models).