bio-atac-seq-allele-specific-accessibility
Detect allele-specific chromatin accessibility from ATAC-seq using WASP, GATK ASEReadCounter, or RASQUAL.
Skill by BioTender-max
Chalk Labs
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Install
Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.
npx agentmarket install skill/biotender-max-bio-atac-seq-allele-specific-accessibility
Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.
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About
Use cases: legal
Reviews
Write a reviewNo reviews yet. Installed it? Reviews come from verified installers only. How reviews work
Permissions
What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.
- Tools
- No tools found
- Secrets
- None asked for
- Install scripts
- None found
- Runs as
- Shell scripts
Network hosts it talks to 1
codeload.github.com· found in install command
Files it touches
~/.claude/skills/bio-atac-seq-allele-specific-accessibility
What's inside
- Skill name
bio-atac-seq-allele-specific-accessibility- Description
- Detect allele-specific chromatin accessibility from ATAC-seq using WASP, GATK ASEReadCounter, or RASQUAL. Use when mapping cis-regulatory genetic variants from heterozygous SNPs, separating cis from trans regulation, building chromatin QTL (caQTL) maps, validating GWAS variant function with allelic imbalance, or detecting reference allele mapping bias before downstream analysis.
- License
- NOASSERTION
- Instructions
- 295 lines in SKILL.md · view on GitHub
Before installing
- Ships executable scripts
Agent Skills spec issues
- name: "bio-atac-seq-allele-specific-accessibility" does not match folder "allele-specific-accessibility"
Files (3)
- SKILL.md
- wasp_ase_pipeline.sh · examples/
- usage-guide.md
The license isn't open source, so the instructions aren't shown here. Read SKILL.md on GitHub
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Signals
- Stars
- 206
- Forks
- 36
- Open issues
- 1
- Last commit (this folder)
- May 25, 2026 (5 months ago)
- Last release
- Jul 1, 2026 (4 months ago)
From GitHub (fetched Oct 24, 2026).
Details
- License
- NOASSERTION
- First seen
- Oct 24, 2026
- Last checked
- Oct 24, 2026
- Source
- GitHubgithub-graphql
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Copies of this SKILL.md published by others; search shows only one of them.
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Cite this page
bio-atac-seq-allele-specific-accessibility skill. Agent Mart. https://agentmart.dev/skills/biotender-max-bio-atac-seq-allele-specific-accessibility (last updated 2026-10-24)