“PubMed”

Search and verify biomedical literature in PubMed.

Search PubMed for scientific literature and retrieve abstracts

Search PubMed, fetch article metadata, traverse citation graphs, and look up MeSH terms from the command line.

Fetch papers from PubMed by PMID or DOI, or search PubMed by query

Search PubMed, preserve complete abstracts and sections, and produce research briefings with abstract openings or optional OpenAI/Ollama summaries.

Direct REST API access to PubMed.

Search PubMed for scientific literature, including published clinical trials.

Search PubMed/MEDLINE for biomedical literature via NCBI E-utilities API.

Build and validate a PubMed search string for a meta-analysis.

Screen a PubMed plain-text export for a systematic review or meta-analysis and produce a balanced CSV shortlist.

Use when analyzing a researcher's publication record from PubMed.

Given an article DOI or PubMed ID, discover and download the genomics data files deposited by the authors (VCF, FASTA, H5AD, CSV, JSON, BAM, etc.) from public…

Search PubMed and bioRxiv for bioinformatics literature, synthesise results into a structured report, and build a citation graph — all locally, with a…

Conducts systematic, scoping, and narrative literature reviews using PubMed, arXiv, bioRxiv, Semantic Scholar, and other appropriate sources.

Retrieve extensive literature (PubMed) and patent associated with a specific chemical compound via PubChem.

Find the papers that answer a research query in Firecrawl's research paper index — a corpus of paper abstracts whose largest share is biomedical and…

学术论文搜索、引用分析、开放获取 PDF 判定与结构化元数据提取专用 Skill。Use when the user asks to search/find papers, do literature review/survey/systematic review/PRISMA work, get citation…

给定 PMID/PMCID 取结构化全文（NLM BioC XML/JSON）。封装 BioC PubMed（标题+摘要）和 BioC PMC OA（开放获取全文）端点，输出按章节切分的段落、表格上下文、RAG 友好 chunk，适合大批量入向量库。Fetches structured fulltext from…

给定 PMID / PMCID 取结构化全文（BioC XML/JSON）。封装 NLM BioC PubMed API（标题+摘要）和 BioC PMC OA API（开放获取全文），输出按章节切分的段落、表格上下文、RAG 友好 chunk。适合大批量入向量库。触发词：全文抽取 / BioC / RAG 入库…

Reviews PubMed evidence for biological interactions and model assumptions using an explicit evidence matrix.

Academic literature orientation skill that searches papers via free keyless APIs (PubMed E-utilities + OpenAlex) by default — with the Consensus MCP as an…

Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.).

Complete biomedical information search combining PubMed, preprints, clinical trials, and FDA drug labels.

Use when Codex needs multi-source academic literature retrieval across OpenAlex, PubMed, Semantic Scholar, and arXiv; combines search results into one…