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initialize-biomedical-project

Initialize a governed biomedical analysis project with explicit scientific goals, cohort definitions, identifiers, environment planning, provenance files, and…

Skill by zerostwo

IndexedApache-2.0
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Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.

npx agentmarket install skill/zerostwo-initialize-biomedical-project

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About

Initialize a governed biomedical analysis project with explicit scientific goals, cohort definitions, identifiers, environment planning, provenance files, and validation gates. Use when starting or converting a conversation into a durable Shennong project.

Use cases: research

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What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.

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Network hosts it talks to 1

  • codeload.github.com · found in install command

Files it touches

  • ~/.claude/skills/initialize-biomedical-project

What's inside

Skill name
initialize-biomedical-project
Description
Initialize a governed biomedical analysis project with explicit scientific goals, cohort definitions, identifiers, environment planning, provenance files, and validation gates. Use when starting or converting a conversation into a durable Shennong project.
License
Apache-2.0
Instructions
12 lines in SKILL.md · view on GitHub

Files (2)

  • SKILL.md
  • shennong.skill.yaml

SKILL.md (first lines)

# Initialize a biomedical project

1. Clarify the scientific question, organism, assay, cohort, groups, inferential unit, reference build, annotation release, and expected outputs.
2. Call `plan.propose` before creating project content. Mark unresolved biological or design choices as waiting steps.
3. Inspect existing project files before proposing additions. Preserve raw inputs and use project-relative URIs.
4. Create only the minimal project structure and environment plan needed for the agreed analysis.
5. Record dataset references, design decisions, random seeds, environment locks, and expected validation checks.
6. Register generated governance artifacts and report every unresolved assumption.

Do not infer missing sample metadata or silently replace an existing project decision.

From zerostwo/shennong-os, Apache-2.0.

More from zerostwo/shennong-os

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Last commit (this folder)
Jul 18, 2026 (3 months ago)

From GitHub (fetched Oct 24, 2026).

Details

License
Apache-2.0
Repository
github.com/zerostwo/shennong-os
First seen
Oct 24, 2026
Last checked
Oct 24, 2026
Source
GitHubgithub-graphql

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Cite this page

initialize-biomedical-project skill. Agent Mart. https://agentmart.dev/skills/zerostwo-initialize-biomedical-project (last updated 2026-10-24)