structure-perturbation
Apply random/Gaussian/scaled-random displacements to atomic structures, single or batch.
Skill by theAfish
Install
Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.
npx agentmarket install skill/theafish-structure-perturbation
Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.
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About
Reviews
Write a reviewNo reviews yet. Installed it? Reviews come from verified installers only. How reviews work
Permissions
What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.
- Tools
- No tools found
- Secrets
- None asked for
- Install scripts
- None found
- Runs as
- Python package
Network hosts it talks to 1
codeload.github.com· found in install command
Files it touches
~/.claude/skills/structure-perturbation
What's inside
- Skill name
structure-perturbation- Description
- Apply random/Gaussian/scaled-random displacements to atomic structures, single or batch.
- License
- unknown
- Instructions
- 19 lines in SKILL.md · view on GitHub
Before installing
- Ships executable scripts
Files (3)
- SKILL.md
- requirements.txt
- structure_perturbation.py · scripts/
The license isn't open source, so the instructions aren't shown here. Read SKILL.md on GitHub
More from theAfish/AtomSculptor
- 0.501score
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Workflow and pitfalls for generating crystal surfaces (slabs) from bulk structures.
SkillCFreshness: C★ 2Claude Code +9 - 0.501score
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Build common bulk crystal structures (FCC/BCC/HCP/diamond/zincblende/...) using ASE.
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surface-defect-creation
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Workflow for vacancies, substitutions, doping, interstitials, antisites, and complex defects in bulk/surface/CNT structures.
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molecular-structure-creation
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Methods for building isolated molecules (ASE database, SMILES via RDKit, organometallics, endohedral cages, NEB pathways).
SkillCFreshness: C★ 2Claude Code +9 - 0.499score
structure-inspect
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Read and validate atomic structures — summarize a file, dump raw text, measure inter-atomic distances, detect overlapping atoms.
SkillCFreshness: C★ 2Claude Code +9 - 0.499score
surface-builder
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Build a surface slab (Miller indices, layers, vacuum) from a bulk crystal, optionally first symmetrizing to the conventional cell.
SkillCFreshness: C★ 2Claude Code +9 - 0.496score
nanotube-builder
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Build carbon nanotubes (CNTs) of any chirality (n,m), length, bond, and PBC.
SkillCFreshness: C★ 2Claude Code +9 - 0.496score
sandwich-structure-creation
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Recipe for sandwich and multi-layer vdW heterostructures (e.g.
SkillCFreshness: C★ 2Claude Code +9 - 0.496score
structure-image
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Render a PNG image of an atomic structure (rotation, DPI controllable) using ASE + matplotlib.
SkillCFreshness: C★ 2Claude Code +9 - 0.496score
supercell-builder
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Build supercells from a bulk/slab structure by integer or 3×3-matrix multiplication.
SkillCFreshness: C★ 2Claude Code +9 - 0.496score
supercell-dimension-check
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How to size supercells correctly: primitive vs.
SkillCFreshness: C★ 2Claude Code +9 - 0.496score
surface-adsorption
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Recipe for placing adsorbates on surfaces: site selection, height, orientation, periodic-image clearance.
SkillCFreshness: C★ 2Claude Code +9
Signals
- Stars
- 2
- Forks
- 1
- Open issues
- 0
- Last commit (this folder)
- May 15, 2026 (5 months ago)
From GitHub (fetched Oct 24, 2026).
Details
- License
- License unknown
- Repository
- github.com/theAfish/AtomSculptor
- First seen
- Oct 24, 2026
- Last checked
- Oct 24, 2026
- Source
- GitHubgithub-graphql
More from theAfish
- 0.501score
surface-creation
theAfish
Workflow and pitfalls for generating crystal surfaces (slabs) from bulk structures.
SkillCFreshness: C★ 2Claude Code +9 - 0.501score
crystal-builder
theAfish
Build common bulk crystal structures (FCC/BCC/HCP/diamond/zincblende/...) using ASE.
SkillCFreshness: C★ 2Claude Code +9 - 0.499score
surface-defect-creation
theAfish
Workflow for vacancies, substitutions, doping, interstitials, antisites, and complex defects in bulk/surface/CNT structures.
SkillCFreshness: C★ 2Claude Code +9 - 0.499score
molecular-structure-creation
theAfish
Methods for building isolated molecules (ASE database, SMILES via RDKit, organometallics, endohedral cages, NEB pathways).
SkillCFreshness: C★ 2Claude Code +9 - 0.499score
surface-builder
theAfish
Build a surface slab (Miller indices, layers, vacuum) from a bulk crystal, optionally first symmetrizing to the conventional cell.
SkillCFreshness: C★ 2Claude Code +9 - 0.499score
structure-inspect
theAfish
Read and validate atomic structures — summarize a file, dump raw text, measure inter-atomic distances, detect overlapping atoms.
SkillCFreshness: C★ 2Claude Code +9
Cite this page
structure-perturbation skill. Agent Mart. https://agentmart.dev/skills/theafish-structure-perturbation (last updated 2026-10-24)