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Install
Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.
npx agentmarket install skill/tassiovale-deeptools
Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.
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About
Use cases: data
Reviews
Write a reviewNo reviews yet. Installed it? Reviews come from verified installers only. How reviews work
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What's inside
- Skill name
deeptools- Description
- NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
- License
- BSD license
- Compatibility
- Requires Python >3.8 and deepTools 3.5.6-compatible dependencies. The upstream project recommends conda/bioconda for full dependency resolution; repo examples use uv with pinned PyPI installs for reproducible command-line workflows.
- Metadata
- version: 1.1 · skill-author: K-Dense Inc.
- Instructions
- 525 lines in SKILL.md · view on GitHub
Before installing
- Ships executable scripts
Agent Skills spec issues
- allowed-tools: must be a space-separated string
- body: 525 lines (spec recommends under 500)
Files (8)
- SKILL.md
- quick_reference.md · assets/
- effective_genome_sizes.md · references/
- normalization_methods.md · references/
- tools_reference.md · references/
- workflows.md · references/
- validate_files.py · scripts/
- workflow_generator.py · scripts/
The license isn't open source, so the instructions aren't shown here. Read SKILL.md on GitHub
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- 0.549score
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SkillCFreshness: C★ 12Claude Code +9 - 0.549score
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Web toolkit powered by Exa, tuned for scientific and technical content.
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bulk-rnaseq
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End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon…
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diffdock
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DiffDock and DiffDock-L molecular docking.
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cellxgene-census
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Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data.
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bids
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Use this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET…
SkillCFreshness: C★ 12Claude Code +9 - 0.514score
algorithmic-art
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Creating algorithmic art using p5.js with seeded randomness and interactive parameter exploration.
SkillCFreshness: C★ 12Claude Code +9 - 0.514score
brand-guidelines
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Applies Anthropic's official brand colors and typography to any sort of artifact that may benefit from having Anthropic's look-and-feel.
SkillCFreshness: C★ 12Claude Code +9 - 0.514score
canvas-design
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Create beautiful visual art in .png and .pdf documents using design philosophy.
SkillCFreshness: C★ 12Claude Code +9 - 0.514score
doc-coauthoring
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Guide users through a structured workflow for co-authoring documentation.
SkillCFreshness: C★ 12Claude Code +9 - 0.513score
executing-plans
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Use when you have a written implementation plan to execute in a separate session with review checkpoints
SkillCFreshness: C★ 12Claude Code +9
Signals
- Stars
- 12
- Forks
- 4
- Open issues
- 0
- Last commit (this folder)
- Jun 10, 2026 (4 months ago)
- Last release
- Jul 26, 2026 (3 months ago)
From GitHub (fetched Oct 24, 2026).
Details
- Version
- 1.1
- License
- BSD license
- Repository
- github.com/tassiovale/claude-code-kit
- First seen
- Oct 24, 2026
- Last checked
- Oct 24, 2026
- Source
- GitHubgithub-graphql
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- 0.549score
esm
tassiovale
Use when working directly with the `esm` Python SDK, ESM3 or ESMC model IDs, Forge/Biohub inference clients, or ESMFold2 folding workflows.
SkillCFreshness: C★ 12Claude Code +9 - 0.549score
exa-search
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Web toolkit powered by Exa, tuned for scientific and technical content.
SkillCFreshness: C★ 12Claude Code +9 - 0.545score
bulk-rnaseq
tassiovale
End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon…
SkillCFreshness: C★ 12Claude Code +9 - 0.542score
diffdock
tassiovale
DiffDock and DiffDock-L molecular docking.
SkillCFreshness: C★ 12Claude Code +9 - 0.540score
cellxgene-census
tassiovale
Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data.
SkillCFreshness: C★ 12Claude Code +9 - 0.535score
bids
tassiovale
Use this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET…
SkillCFreshness: C★ 12Claude Code +9
Done for you
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Cite this page
deeptools skill. Agent Mart. https://agentmart.dev/skills/tassiovale-deeptools (last updated 2026-10-24)