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clean-worktrees

Remove stale agent worktree directories and their orphaned branches.

Skill by stuartshields

IndexedMIT★ 2
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Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.

npx agentmarket install skill/stuartshields-clean-worktrees

Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.

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About

Remove stale agent worktree directories and their orphaned branches. Run after parallel agent work or when .claude/worktrees/ accumulates cruft.

Use cases: agent-building

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What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.

Tools
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Network hosts it talks to 1

  • codeload.github.com · found in install command

Files it touches

  • ~/.claude/skills/clean-worktrees

What's inside

Skill name
clean-worktrees
Description
Remove stale agent worktree directories and their orphaned branches. Run after parallel agent work or when .claude/worktrees/ accumulates cruft.
License
MIT
Instructions
68 lines in SKILL.md · view on GitHub

Files (1)

  • SKILL.md

SKILL.md (first lines)

# Clean Stale Agent Worktrees

Remove worktree directories and orphaned `worktree-agent-*` branches left behind by agent isolation mode.

Based on community patterns from [claude-codex-settings](https://github.com/fcakyon/claude-codex-settings/blob/main/plugins/github-dev/commands/clean-gone-branches.md) and [claude-code-ultimate-guide](https://github.com/FlorianBruniaux/claude-code-ultimate-guide/blob/main/examples/commands/git-worktree-remove.md), adapted for Claude Code's agent worktree pattern.

Related upstream issue: [anthropics/claude-code#26725](https://github.com/anthropics/claude-code/issues/26725)

## Process

### 1. Inventory

Run these commands and report counts:

```bash
# Count worktree directories
WORKTREE_DIRS=$(find .claude/worktrees -maxdepth 1 -type d -name 'agent-*' 2>/dev/null | wc -l | tr -d ' ')

# Count git worktree registrations (excluding main)
GIT_WORKTREES=$(git worktree list 2>/dev/null | grep 'worktree-agent-' | wc -l | tr -d ' ')

# Count orphaned branches
ORPHANED_BRANCHES=$(git branch --list 'worktree-agent-*' 2>/dev/null | wc -l | tr -d ' ')
```

Report:
```
## Worktree Inventory

- Worktree directories: {WORKTREE_DIRS}
- Git worktree registrations: {GIT_WORKTREES}
- Orphaned branches: {ORPHANED_BRANCHES}
```

If all counts are 0: report "No stale worktrees found." and stop.

### 2. Dry Run Check

If `$ARGUMENTS` contains `--dry-run`: report the inventory and stop. Do not delete anything.

### 3. Clean Up

Run in this order:

```bash
# Prune stale git worktree references
git worktree prune

# Remove registered worktrees that match agent pattern
git worktree list | grep 'worktree-agent-' | awk '{print $1}' | while read wt; do
  git worktree remove --force "$wt"
done

# Delete orphaned branches (allowed by block-git-commit.sh for worktree-agent-* only)
git branch --list 'worktree-agent-*' | xargs git branch -D
```

### 4. Report

```
## Cleanup Complete

- Removed {N} worktree directories
- Deleted {N} orphaned branches
- Pruned git worktree references
```

From stuartshields/claude-setup, MIT.

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Last commit (this folder)
May 18, 2026 (5 months ago)

From GitHub (fetched Oct 24, 2026).

Details

License
MIT
First seen
Oct 24, 2026
Last checked
Oct 24, 2026

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Cite this page

clean-worktrees skill. Agent Mart. https://agentmart.dev/skills/stuartshields-clean-worktrees (last updated 2026-10-24)