dismech-notebook
DisMech rare disease knowledge mapped into Alhazen notebook memory
Skill by sciknow-io
Install
Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.
npx agentmarket install skill/sciknow-io-dismech-notebook-e43557
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About
Reviews
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Permissions
What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.
- Tools
- No tools found
- Secrets
- None asked for
- Install scripts
- None found
- Runs as
- Python package
Network hosts it talks to 1
codeload.github.com· found in install command
Files it touches
~/.claude/skills/dismech-notebook
What's inside
- Skill name
dismech-notebook- Description
- DisMech rare disease knowledge mapped into Alhazen notebook memory
- License
- MIT
- Instructions
- 36 lines in SKILL.md · view on GitHub
Before installing
- Ships executable scripts
Files (41)
- plugin.json · .claude-plugin/
- .standalone-db
- SKILL.md
- USAGE.md
- lib.ts · dashboard/
- page.tsx · dashboard/pages/dismech/disease/[name]/
- page.tsx · dashboard/pages/dismech/
- layout.tsx · dashboard/pages/
- route.ts · dashboard/routes/disease/[name]/
- route.ts · dashboard/routes/diseases/
- route.ts · dashboard/routes/search/
- route.ts · dashboard/routes/stats/
- dismech_notebook.py
- hooks.json · hooks/
- README.md · mapping/
- .gitkeep · mapping/rules/
- 01_disease.yaml · mapping/rules/
- 02_gene_descriptor.yaml · mapping/rules/
- 03_phenotype_descriptor.yaml · mapping/rules/
- 04_disease_descriptor.yaml · mapping/rules/
- 05_anatomical_descriptor.yaml · mapping/rules/
- 06_celltype_descriptor.yaml · mapping/rules/
- 07_process_descriptor.yaml · mapping/rules/
- 08_papers.yaml · mapping/rules/
- 10_mechanism.yaml · mapping/rules/
- 11_phenotype.yaml · mapping/rules/
- 12_genetic.yaml · mapping/rules/
- 13_treatment.yaml · mapping/rules/
- 15_disease_term.yaml · mapping/rules/
- 20_causal_edge.yaml · mapping/rules/
- 21_mechanism_gene.yaml · mapping/rules/
- 22_mechanism_location.yaml · mapping/rules/
- 23_mechanism_celltype.yaml · mapping/rules/
- 24_mechanism_process.yaml · mapping/rules/
- 25_phenotype_term.yaml · mapping/rules/
- 30_evidence_notes.yaml · mapping/rules/
- 31_findings.yaml · mapping/rules/
- schema.deps
- schema.tql
- skill.yaml
- SKILL.md · skills/dismech-notebook/
SKILL.md (first lines)
# DisMech Notebook
Maps the Monarch Initiative **DisMech** rare-disease corpus into the Alhazen
notebook's ICE (information-content-entity) model in TypeDB, using the
cross-database schema mapper, so disease-mechanism knowledge is browsable and
searchable alongside the rest of the notebook.
**Triggers:** disease mechanism curation, DisMech, rare disease knowledge graph
## Prerequisites
- Docker + `uv`.
- `alhazen-core` installed and initialized:
`/plugin install alhazen-core@skillful-alhazen` then `/alhazen-core:init`.
(The SessionStart hook auto-runs init and loads this skill's `schema.tql`.)
## Quick start
```bash
CLI="${CLAUDE_PLUGIN_ROOT}/dismech_notebook.py"
uv run --project "${CLAUDE_PLUGIN_ROOT}" python "$CLI" stats
uv run --project "${CLAUDE_PLUGIN_ROOT}" python "$CLI" search --query lysosomal
```
## Commands
| Command | Description |
|---|---|
| `stats` | Entity counts (diseases, mechanisms, terms) |
| `list-diseases [--category C] [--limit N] [--offset N]` | List diseases |
| `show-disease --name NAME` | Full detail for one disease |
| `search --query TEXT [--limit N]` | Search diseases and mechanisms |
**Read `USAGE.md` for the full reference.**From sciknow-io/alhazen-skill-deep-research, MIT.
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Signals
- Stars
- 1
- Forks
- 1
- Open issues
- 0
- Last commit (this folder)
- Jul 9, 2026 (3 months ago)
From GitHub (fetched Oct 24, 2026).
Details
- License
- MIT
- First seen
- Oct 24, 2026
- Last checked
- Oct 24, 2026
- Source
- GitHubgithub-graphql
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Cite this page
dismech-notebook skill. Agent Mart. https://agentmart.dev/skills/sciknow-io-dismech-notebook-e43557 (last updated 2026-10-24)