biosamples-sample-search
Use this skill to search EBI BioSamples for public sample metadata by text query or lightweight filters and return compact summaries.
Skill by ma-compbio-lab
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Install
Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.
npx agentmarket install skill/ma-compbio-lab-biosamples-sample-search
Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.
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About
Use cases: data
Reviews
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Permissions
What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.
- Tools
- No tools found
- Secrets
- None asked for
- Install scripts
- None found
- Runs as
- Python package
Network hosts it talks to 1
codeload.github.com· found in install command
Files it touches
~/.claude/skills/biosamples-sample-search
What's inside
- Skill name
biosamples-sample-search- Description
- Use this skill to search EBI BioSamples for public sample metadata by text query or lightweight filters and return compact summaries.
- License
- Apache-2.0
- Instructions
- 26 lines in SKILL.md · view on GitHub
Before installing
- Ships executable scripts
Files (8)
- SKILL.md
- README.md · assets/
- breast_cancer_sample.json · assets/
- README.md · examples/
- metadata.yaml
- refs.md
- search_biosamples_samples.py · scripts/
- test_search_biosamples_samples.py · tests/
SKILL.md (first lines)
## Purpose Search public sample metadata through the official EBI BioSamples API. ## When to use - You need a quick metadata-discovery skill for public biospecimens. - You want sample accessions, organism hints, and a few normalized characteristics. ## When not to use - You need full sample graph traversal or submission workflows. - You need to download raw experimental data instead of metadata. ## Inputs - A free-text search string. - Optional page and page-size controls. ## Outputs - A JSON summary with BioSamples accessions and normalized characteristics. ## Requirements - Network access to `ebi.ac.uk` - Python standard library only ## Provenance - BioSamples API overview: https://www.ebi.ac.uk/biosamples/docs/references/api/overview
From ma-compbio-lab/SkillFoundry, Apache-2.0.
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Signals
- Stars
- 43
- Forks
- 6
- Open issues
- 0
- Last commit (this folder)
- Apr 2, 2026 (7 months ago)
From GitHub (fetched Oct 24, 2026).
Details
- License
- Apache-2.0
- Repository
- github.com/ma-compbio-lab/SkillFoundry
- First seen
- Oct 24, 2026
- Last checked
- Oct 24, 2026
- Source
- GitHubgithub-graphql
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Cite this page
biosamples-sample-search skill. Agent Mart. https://agentmart.dev/skills/ma-compbio-lab-biosamples-sample-search (last updated 2026-10-24)