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hmdb-database

Access Human Metabolome Database (220K+ metabolites).

Skill by lamm-mit

IndexedProprietary★ 250
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Install

Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.

npx agentmarket install skill/lamm-mit-hmdb-database

Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.

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About

Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.

Use cases: backend, data

Reviews

Write a review

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Permissions

What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.

Tools
No tools found
Secrets
None asked for
Install scripts
None found
Runs as
Python package

Network hosts it talks to 1

  • codeload.github.com · found in install command

Files it touches

  • ~/.claude/skills/hmdb-database

What's inside

Skill name
hmdb-database
Description
Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.
License
HMDB is offered to the public as a freely available resource. Use and re-distribution of the data, in whole or in part, for commercial purposes requires explicit permission of the authors and explicit acknowledgment of the source material (HMDB) and the original publication (see the HMDB citing page). We ask that users who download significant portions of the database cite the HMDB paper in any resulting publications.
Metadata
skill-author: K-Dense Inc.
Instructions
189 lines in SKILL.md · view on GitHub

Before installing

  • Ships executable scripts

Files (4)

  • SKILL.md
  • hmdb_data_fields.md · references/
  • query.cpython-313.pyc · scripts/__pycache__/
  • query.py · scripts/

The license isn't open source, so the instructions aren't shown here. Read SKILL.md on GitHub

More from lamm-mit/scienceclaw

Signals

Stars
250
Forks
47
Open issues
1
Last commit (this folder)
Mar 14, 2026 (7 months ago)
Last release
Jun 23, 2026 (4 months ago)

From GitHub (fetched Oct 24, 2026).

Details

License
Proprietary
Repository
github.com/lamm-mit/scienceclaw
First seen
Oct 24, 2026
Last checked
Oct 24, 2026
Source
GitHubgithub-graphql

More from lamm-mit

Cite this page

hmdb-database skill. Agent Mart. https://agentmart.dev/skills/lamm-mit-hmdb-database (last updated 2026-10-24)