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manuscript-as-code

Treat manuscripts as software: version control, reproducible builds, figure pipelines, CI, and structured repo layout.

Skill by foryourhealth111-pixel

IndexedApache-2.0★ 3,764
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Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.

npx agentmarket install skill/foryourhealth111-pixel-manuscript-as-code

Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.

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About

Treat manuscripts as software: version control, reproducible builds, figure pipelines, CI, and structured repo layout. Helps teams avoid 'final_v7' chaos and ensures submission-ready artifacts.

Use cases: devops

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What this skill can do and what it asks for, from its SKILL.md and code. Checked Oct 25, 2026.

Tools
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Secrets
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Install scripts
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Network hosts it talks to 1

  • codeload.github.com · found in install command

Files it touches

  • ~/.claude/skills/manuscript-as-code

What's inside

Skill name
manuscript-as-code
Description
Treat manuscripts as software: version control, reproducible builds, figure pipelines, CI, and structured repo layout. Helps teams avoid 'final_v7' chaos and ensures submission-ready artifacts.
License
Apache-2.0
Instructions
54 lines in SKILL.md · view on GitHub

Agent Skills spec issues

  • allowed-tools: must be a space-separated string

Files (2)

  • SKILL.md
  • repo-structure.md · templates/

SKILL.md (first lines)

# Manuscript as Code（论文工程化）

## 目标

把“写论文”升级成“交付可复现的出版工程”：
- 结构清晰：任何人进仓库都知道哪里改正文、哪里改图、哪里改引用
- 可复现：一条命令能构建 PDF/HTML；CI 自动验证
- 可审计：每张图/每个结果都有来源（代码/数据/参数）

适用：
- 多人协作写作（导师/合作者/跨机构）
- 反复投稿/返修（需要明确改动轨迹）
- 图表多、实验多、容易“找不到版本”的项目

---

## 推荐仓库结构（最小可行）

见 `templates/repo-structure.md`。核心思想：
- `manuscript/`：只放正文与引用（source-of-truth）
- `figures/`：每张图一个目录（source + out）
- `build/`：所有生成物（可删除，可再生）
- `submission/` 与 `revision/`：投稿与返修阶段产物

---

## 元规则（工程化的关键）

### 1) 生成物与源文件分离

- 源：`figures/fig-02/src/plot.py`
- 产物：`figures/fig-02/out/fig-02.pdf`
- 禁止把产物当源文件编辑（比如在 PDF 上涂改）

### 2) 每张图都要能“重生成”

最少要求：
- 一条命令 + 固定参数能导出最终图（PDF/TIFF）
- 记录依赖版本与随机种子（如果有）

### 3) 把“投稿约束”写成配置

推荐维护：
- `submission/submission-manifest.yml`（统一记录规格与完成度）

---

## 案例（推荐学习）

- Manubot：`manubot/rootstock`（论文的 CI/协作写作范式）
- Deep review：`greenelab/deep-review`（评审/返修视角）

From foryourhealth111-pixel/Vibe-Skills, Apache-2.0.

More from foryourhealth111-pixel/Vibe-Skills

Signals

Stars
3,764
Forks
341
Open issues
36
Last commit (this folder)
Mar 5, 2026 (7 months ago)
Last release
Oct 18, 2026 (10 days ago)

From GitHub (fetched Oct 24, 2026).

Details

License
Apache-2.0
Repository
github.com/foryourhealth111-pixel/Vibe-Skills
First seen
Oct 24, 2026
Last checked
Oct 24, 2026
Source
GitHubgithub-graphql

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Cite this page

manuscript-as-code skill. Agent Mart. https://agentmart.dev/skills/foryourhealth111-pixel-manuscript-as-code (last updated 2026-10-24)