Machine learning

Analyzes user-requested Screenpipe history windows to detect repeated research workflows, match existing scientific skills, and stage new skill drafts or…

Builds molecular property prediction and MoleculeNet workflows with DeepChem, including SMILES featurization, scaffold or grouped holdouts, masked labels…

Analyzes, manipulates, compares, annotates, and visualizes phylogenetic or other hierarchical trees with ETE 4.

Supports geospatial research workflows for remote sensing, vector and raster GIS, spatial statistics, terrain and network analysis, and machine learning for…

Discovers and evaluates scientific datasets, models, methodology posts, and Spaces through the Hugging Science catalog.

Local document and PDF parsing that returns spatial text with bounding boxes.

Queries the NCATS Translator ARAX production API for bounded, typed, provenance-rich one-hop and endpoint-pinned two-hop biomedical knowledge-graph…

Builds and analyzes phylogenetic trees using MAFFT multiple sequence alignment, IQ-TREE maximum likelihood with ModelFinder and branch support, and FastTree…

Provides Therapeutics Data Commons workflows through PyTDC for registry discovery, dataset access, task-aware splits, evaluator metrics, benchmark groups, and…

Deep learning framework (PyTorch Lightning / lightning package).

Supports machine learning in Python with scikit-learn.

Simulates biochemical kinetic models from SBML or Antimony with Tellurium and libRoadRunner, checks model units, compares deterministic parameter…

Supports work with Outpost Bio's open microbiome foundation models - the Waypoint checkpoints (Waypoint-6m, Waypoint-45m, Waypoint-170m), the Atlas…

Secures and rate limits backend services behind Google Cloud API Gateway across OpenAPI 2.0 and OpenAPI 3.0.x API configurations, including MCP-enabled…

Configures Google Cloud API Gateway to act as a remote Model Context Protocol (MCP) server (Public Preview) that exposes REST APIs as agent tools over HTTP…

Stands up an Apigee API proxy that a Google Cloud Agent Gateway calls as an ext-proc (Service Extension) callout on an agent's LLM traffic, to meter token…

Diagnoses GKE JobSet interruptions, restarts, and preemptions for AI/ML training workloads autonomously.

A specialized skill for embedding and extracting resilient watermarks in text by manipulating sentence lengths and using Fountain Codes.

Uses the Biohub esm Python SDK for ESM3 protein generation, ESMC embeddings, and ESMFold2 all-atom folding.

Plans and audits use of ChicagoHAI HypoGeniC/HypoRefine for LLM-assisted hypothesis generation from labeled text datasets.

Supports local computational pathology research with PathML: slide loading and tiling, preprocessing and QC, h5path storage, multiplex quantification, spatial…

Builds and checks Bayesian models with PyMC, including hierarchical models, NUTS MCMC, variational inference, mutable-data predictions, posterior predictive…

Summarize last 7 days of compass drift events · alert distribution + top 5 negative drifts · pure read-only · NO LLM.

Scan project memory · age distribution + ungrouped count (L1 build readiness) + per-namespace entity stats · NO LLM.