Data

Segment users from feedback data based on behavior, JTBD, and needs.

Query metadata and download data from ArrayExpress, EMBL-EBI's functional genomics collection, now hosted inside BioStudies.

Query metadata and download data from EMBL-EBI BioStudies, the database that describes biological studies and links their data across collections…

Query metadata and download sequencing data from the European Nucleotide Archive (ENA) via the Portal and Browser APIs.

Query metadata and download data from the NCBI Gene Expression Omnibus (GEO).

Query metadata and download data from the PRIDE Archive, EMBL-EBI's proteomics identifications database, via the PRIDE Archive REST API v3.

End-to-end WGS to polygenic risk score pipeline.

Maintenance orchestrator for the brooks-lint plugin itself.

Maintenance orchestrator for the brooks-lint plugin itself.

Orchestrate iOS screenshot automation with xcodebuild/simctl for build-run, AXe for UI actions, JSON settings and plan files, Koubou-based framing (`asc…

Analyze KiCad projects and PDF schematics: schematics, PCB layouts, Gerbers, footprints, symbols, netlists, and design rules.

Triggered when the user submits code or requests a comprehensive code quality analysis.

Triggered when the user needs to convert data formats, such as CSV to JSON, JSON to YAML, or XML to JSON.

Unified analysis pipeline for affinity-based proteomics platforms — Olink (PEA, NPX) and SomaLogic SomaScan (SOMAmer, RFU).

Given an article DOI or PubMed ID, discover and download the genomics data files deposited by the authors (VCF, FASTA, H5AD, CSV, JSON, BAM, etc.) from public…

Search scientific papers via the BGPT MCP server and retrieve structured experimental data — methods, results, conclusions, quality scores, and 25+ metadata…

Run read-only SQL against BigQuery public datasets with local result capture, cost safeguards, and reproducibility outputs.

Methylation cycle analysis — enzymatic activity profiles, Net Methylation Capacity, BH4 axis estimates, compound heterozygosity detection from SNP genotype…

Compute HEIM diversity and equity metrics from VCF or ancestry data.

Flow.bio API bridge — authenticate, browse pipelines/samples/projects, search, upload data, launch pipeline executions, and check run status on any Flow…

Query and display Labstep electronic lab notebook data — experiments, protocols, resources, and inventory — via labstepPy.

Personalised nutrition report from consumer genetic data (23andMe, AncestryDNA, VCF) — interrogates nutritionally-relevant SNPs and generates actionable…

Generate self-contained HTML visual explanations for systems, code changes, plans, data, and technical concepts.

Query the ClinPGx API for pharmacogenomic gene-drug data, clinical annotations, CPIC guidelines, and FDA drug labels