Agent building

Review and approve/reject pending tasks or plans in Bernstein.

Show detailed cost breakdown and budget status for the Bernstein orchestrator.

Create a new task in the Bernstein orchestrator.

Capture and review Agent Skill observations, and create, run, diagnose, or iteratively improve Skill evaluations (evals) with the skill-up CLI.

Monitors task execution for skill improvement opportunities: logs patterns, user corrections and methodology worth preserving to the workspace, turns them…

Cross-agent messaging via SQLite.

Guardian service that monitors the active runtime agent's state and automatically restarts it if stopped.

Upgrade Claude Code to the latest version with graceful shutdown and auto-restart.

Core memory system.

AI image generation with OpenAI GPT Image 2.5, Azure OpenAI, Google, OpenRouter, DashScope, Z.AI GLM-Image, MiniMax, Jimeng, Seedream, Replicate and Agnes APIs.

Use the unprimed sub agent as a second set of eyes before accepting visual work — MANDATORY before declaring any user-reported visual bug fixed or claiming a…

Scan agent skills for security issues.

Create a skill or bring an existing one up to the same standard (validate + asm eval fix loop); run evals, tune triggering.

Render the provided prompt template with Jinja context and send it to the active NPC's LLM.

Fetch a region of cis-eQTL summary statistics from EBI eQTL Catalogue v7+ via tabix-on-FTP.

Fetch a regional slice of plasma pQTL summary statistics from the UK Biobank Pharma Proteomics Project (UKB-PPP; Sun 2023 Nature) for a specific (protein…

Triggered when the user needs to organize project files, analyze directory structure, or generate a project report.

Reset a stuck Cursor ACP thread in your chat app and reload its configuration.

Search scientific papers via the BGPT MCP server and retrieve structured experimental data — methods, results, conclusions, quality scores, and 25+ metadata…

Compute evidence-aware polygenic risk scores from a local VCF or WGS file through the validated just-prs engine and a pinned local just-prs MCP server.

Interactive Goeminne proteomic aging clock with organ filters and per-protein contribution breakdown (protein NPX × coefficient).

Fetch a region of GWAS summary statistics from the NHGRI-EBI GWAS Catalog harmonised collection via tabix-on-FTP.

Render a 4-panel regional LocusCompare diagnostic for one (lead variant, exposure study, outcome study) tuple - overlays GWAS Manhattan, QTL Manhattan…

Install a Python package directly from an untrusted remote archive