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bio-expression-matrix-counts-ingest

Load gene expression count matrices from various formats including CSV, TSV, featureCounts, Salmon, kallisto, and 10X.

Skill by BioTender-max

IndexedNOASSERTION★ 206
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Install

Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.

npx agentmarket install skill/biotender-max-bio-expression-matrix-counts-ingest

Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.

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About

Load gene expression count matrices from various formats including CSV, TSV, featureCounts, Salmon, kallisto, and 10X. Use when importing quantification results for downstream analysis.

Use cases: spreadsheets

Reviews

Write a review

No reviews yet. Installed it? Reviews come from verified installers only. How reviews work

Permissions

What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.

Tools
No tools found
Secrets
None asked for
Install scripts
None found
Runs as
Python package

Network hosts it talks to 1

  • codeload.github.com · found in install command

Files it touches

  • ~/.claude/skills/bio-expression-matrix-counts-ingest

What's inside

Skill name
bio-expression-matrix-counts-ingest
Description
Load gene expression count matrices from various formats including CSV, TSV, featureCounts, Salmon, kallisto, and 10X. Use when importing quantification results for downstream analysis.
License
NOASSERTION
Instructions
357 lines in SKILL.md · view on GitHub

Before installing

  • Ships executable scripts

Agent Skills spec issues

  • name: "bio-expression-matrix-counts-ingest" does not match folder "counts-ingest"

Files (3)

  • SKILL.md
  • load_counts.py · examples/
  • usage-guide.md

The license isn't open source, so the instructions aren't shown here. Read SKILL.md on GitHub

More from BioTender-max/awesome-bio-agent-skills

Signals

Stars
206
Forks
36
Open issues
1
Last commit (this folder)
May 25, 2026 (5 months ago)
Last release
Jul 1, 2026 (4 months ago)

From GitHub (fetched Oct 24, 2026).

Details

License
NOASSERTION
Repository
github.com/BioTender-max/awesome-bio-agent-skills
Website
biotender-max.github.io/awesome-bio-agent-skills/
First seen
Oct 24, 2026
Last checked
Oct 24, 2026
Source
GitHubgithub-graphql

More from BioTender-max

Cite this page

bio-expression-matrix-counts-ingest skill. Agent Mart. https://agentmart.dev/skills/biotender-max-bio-expression-matrix-counts-ingest (last updated 2026-10-24)