security-audit
Audit a PHP/CodeIgniter 4 web app for OWASP Top-10 vulnerabilities (SQLi, XSS, CSRF, IDOR, session, upload, secrets).
Skill by bioassembly
Install
Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.
npx agentmarket install skill/bioassembly-security-audit
Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.
Get the weekly diff
The weekly diff: one email a week with new agent tools, notable updates and grade changes, plus security alerts for tools you follow. Double opt-in, one-click unsubscribe.
About
Use cases: frontend, security
Reviews
Write a reviewNo reviews yet. Installed it? Reviews come from verified installers only. How reviews work
Permissions
What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.
- Tools
- No tools found
- Secrets
- None asked for
- Install scripts
- None found
Network hosts it talks to 1
codeload.github.com· found in install command
Files it touches
~/.claude/skills/security-audit
What's inside
- Skill name
security-audit- Description
- Audit a PHP/CodeIgniter 4 web app for OWASP Top-10 vulnerabilities (SQLi, XSS, CSRF, IDOR, session, upload, secrets). Use when asked to assess security vulnerabilities, do a security review, or harden a web app.
- License
- MIT
- Instructions
- 71 lines in SKILL.md · view on GitHub
Files (1)
- SKILL.md
SKILL.md (first lines)
## What I do
- Systematically audit a PHP web app (esp. CodeIgniter 4) for OWASP Top-10 2025 classes
- Distinguish live-reproducible findings from code-read findings; assign severity
- Produce findings in the repo's existing BUGS.txt GitHub-issue format
- Cross-reference against existing BUGS.txt so only UNIQUE findings are added
## OWASP Top 10 2025 checklist (audit order)
- A01 Broken Access Control — IDOR, missing role/ownership checks, mass assignment
- A02 Security Misconfiguration — debug on, default creds, verbose errors, CORS *, missing headers
- A03 Software Supply Chain — unpinned/known-vuln deps, untrusted vendor code
- A04 Cryptographic Failures — hardcoded keys, weak hashes (md5/sha1), plaintext secrets, no HTTPS enforcement
- A05 Injection — SQLi (raw concat, orderBy/like on user input), command injection, XSS (reflected+stored), LDAP, path traversal
- A06 Insecure Design — missing rate limit, no business-logic validation, trust in client state
- A07 Identification & Auth Failures — weak login, no lockout, session fixation, missing MFA, OAuth state/nonce
- A08 Software & Data Integrity Failures — unsafe deserialization, CI/CD integrity, backup restore trust
- A09 Security Logging & Monitoring — no audit trail, no alerting on auth failures
- A10 Sensitive Data Exposure — PII/secrets in logs, dumps, git history, API responses
## PHP / CodeIgniter 4 specific patterns to grep
```bash
# SQLi: raw query / string-built SQL / orderBy+like on request input
rg -n "query\(|->select\(|->where\(|orderBy|like\(" app/ | grep -i "request\|get\|post\|\$"
# XSS: unescaped echo of request/DB data in views
rg -n "<=\s*\$[a-zA-Z_]" app/**/Views/ | grep -v "esc("
# Command injection
rg -n "exec\(|shell_exec\|system\(|passthru\|popen\|proc_open\|`\$" app/
# Unsafe deserialization
rg -n "unserialize\(" app/
# Weak crypto / hardcoded secrets
rg -ni "md5\(|sha1\(|password_hash|AES|openssl|iv|key\s*=" app/
# Path traversal in file ops
rg -n "file_get_contents|fopen|readfile|move_uploaded_file|unlink|include|require" app/ | grep -i "\$"
# Mass assignment / raw request to model
rg -n "save\(|insert\(|update\(" app/ | grep -i "request\|->getPost\|->getVar"
# Session: fixation, missing regenerate, cookie flags
rg -n "regenerate|setTempdata|session\(\)->set|cookieHTTPOnly|cookieSecure|cookieSamesite" app/
```
## CodeIgniter 4 hardening checklist
- CSRF: `$csrfProtection` on; use session-based (not cookie) for stricter; `$tokenRandomize = true`; csrf filter in global Filters; verify token on ALL state-changing POSTs (not just some)
- Escaping: every dynamic `<?= $var ?>` in views wrapped in `esc($var)`; `esc()` default is HTML — use `esc($x, 'js')`/`'attr'` where needed
- Input: `$request->validate()` with rules on every controller method that mutates data; never trust client-supplied IDs/roles
- Auth: session `regenerate(true)` on login/privilege change; set `cookieHTTPOnly=true`, `cookieSecure=true`, `cookieSamesite=Lax`; store minimal session data; use a real session driver (DB/Redis) not files in prod
- Files: use `Services::uploader` with `allowedFileTypes`, `maxSize`, `randomName`/`detectMimeType`; never use raw uploaded filename; store outside webroot or block script execution
- Secrets: no hardcoded keys in source; load from env; rotate any committed secret; `.env`/`env` in .gitignore AND untracked
- DB: use query builder / bindings (`$db->query($sql, [$params])`) — never string-interpolate values; allow-list column names for orderBy/sort
- Errors: `$app->showErrorDetails`/CI_ENVIRONMENT=production off in prod; no stack traces to client
- Headers: add CSP, X-Content-Type-Options, X-Frame-Options, Referrer-Policy, Strict-Transport-Security
- Rate limit: throttle login + sensitive POSTs (CI4 has no built-in; use Throttler or middleware)
## Severity assignment
- CRITICAL: remote code exec, full DB compromise, auth bypass, live secret exposed
- HIGH: stored XSS, IDOR on sensitive data, SQLi requiring auth, session fixation, business-logic bypass
- MEDIUM: reflected XSS, CSRF on low-impact action, missing validation, info disclosure, weak crypto on non-critical data
- LOW: missing hardening header, latent/defense-in-depth, code smell with no current exploit
- DEV-STAGE: acceptable in dev, must fix before prod (default creds, no CI, no rate limit)
## Process
1. Read repo AGENTS.md + existing BUGS.txt to know what's ALREADY found
2. Run the grep patterns above; triage each hit by reading surrounding code
3. For each candidate: confirm the data flow (tainted source -> unsafe sink, no sanitization)
4. Mark [LIVE] if reproducible against running app, else [CODE]
5. Only ADD findings not already in BUGS.txt; reuse existing IDs/sections, append new ones
6. Assign severity per rubric; note CWE + OWASP category
## When to use me
- "Assess the security vulnerabilities", "do a security audit/review", "find security bugs", "harden this app"
- Before production release of a PHP/CI4 web app
- When a new feature adds input handling, auth, file upload, or DB queriesFrom bioassembly/antigravity-sage, MIT.
More from bioassembly/antigravity-sage
- 0.570score
fair-data-principles
bioassembly
Enforce and audit FAIR data principles (Findable, Accessible, Interoperable, Reusable) across scientific datasets, bioinformatics workflows, metadata…
SkillAFreshness: AClaude Code +9 - 0.565score
skill-evaluation
bioassembly
Evaluate and benchmark skills, prompts, or model changes with test cases, assertions, and quantitative comparison.
SkillAFreshness: AClaude Code +9 - 0.565score
first-principles-explainer
bioassembly
Break down complex bioinformatics, data engineering, and algorithmic pipelines from first principles.
SkillAFreshness: AClaude Code +9 - 0.565score
github-repo-best-practices
bioassembly
Create or audit GitHub repositories and READMEs to top-1% standard.
SkillAFreshness: AClaude Code +9 - 0.565score
skill-maker
bioassembly
Author, edit, or evaluate agent skills to best-practice standard by researching top skills repos and testing against real failures.
SkillAFreshness: AClaude Code +9 - 0.565score
pipeline-sketch-results
bioassembly
Consolidate and organize outputs from custom, multi-step sketch/bash/python pipelines into a clean, numbered, user-facing results/ deliverable directory while…
SkillAFreshness: AClaude Code +9 - 0.565score
skill-acquisition
bioassembly
Search online for a trusted, best-practice skill and install it locally when no existing skill covers the task.
SkillAFreshness: AClaude Code +9 - 0.561score
agentic-coding
bioassembly
Working agreements for coding agent loops — plan-then-edit, minimal diffs, verify each step.
SkillAFreshness: AClaude Code +9 - 0.561score
checkpoint
bioassembly
Dump current task state to NOTES.md in the working directory so work survives context compaction or a session restart.
SkillAFreshness: AClaude Code +9 - 0.558score
pdf-inplace-editing
bioassembly
In-place PDF editing/anonymization, zero layout drift — content-stream swaps, raster re-lettering, pixel-diff verified.
SkillAFreshness: AClaude Code +9 - 0.556score
review
bioassembly
Review the current git working diff (staged + unstaged) with the read-only reviewer subagent.
SkillAFreshness: AClaude Code +9 - 0.556score
doctor
bioassembly
Run health diagnostics on the Antigravity harness (MCP endpoints, Serena LSP, skills count, custom subagents, rules, permissions).
SkillAFreshness: AClaude Code +9
Signals
- Stars
- 0
- Forks
- 0
- Open issues
- 0
- Last commit (this folder)
- Oct 8, 2026 (21 days ago)
From GitHub (fetched Oct 24, 2026).
Details
- License
- MIT
- Repository
- github.com/bioassembly/antigravity-sage
- First seen
- Oct 24, 2026
- Last checked
- Oct 24, 2026
- Source
- GitHubgithub-graphql
More from bioassembly
- 0.570score
fair-data-principles
bioassembly
Enforce and audit FAIR data principles (Findable, Accessible, Interoperable, Reusable) across scientific datasets, bioinformatics workflows, metadata…
SkillAFreshness: AClaude Code +9 - 0.565score
skill-acquisition
bioassembly
Search online for a trusted, best-practice skill and install it locally when no existing skill covers the task.
SkillAFreshness: AClaude Code +9 - 0.565score
pipeline-sketch-results
bioassembly
Consolidate and organize outputs from custom, multi-step sketch/bash/python pipelines into a clean, numbered, user-facing results/ deliverable directory while…
SkillAFreshness: AClaude Code +9 - 0.565score
first-principles-explainer
bioassembly
Break down complex bioinformatics, data engineering, and algorithmic pipelines from first principles.
SkillAFreshness: AClaude Code +9 - 0.565score
github-repo-best-practices
bioassembly
Create or audit GitHub repositories and READMEs to top-1% standard.
SkillAFreshness: AClaude Code +9 - 0.565score
skill-evaluation
bioassembly
Evaluate and benchmark skills, prompts, or model changes with test cases, assertions, and quantitative comparison.
SkillAFreshness: AClaude Code +9
Cite this page
security-audit skill. Agent Mart. https://agentmart.dev/skills/bioassembly-security-audit (last updated 2026-10-24)