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lit-synthesizer

Search PubMed and bioRxiv, summarise papers with LLM, build citation graphs, and generate literature review sections.

Skill by beita6969

IndexedMIT★ 1,019
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Works with Claude Code, Claude apps, Codex, Cursor, Gemini CLI, GitHub Copilot, VS Code, OpenCode, Goose, Windsurf. Read the repository before you give any tool access to your data.

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About

Search PubMed and bioRxiv, summarise papers with LLM, build citation graphs, and generate literature review sections.

Use cases: ml, research

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What this skill can do and what it asks for, from its SKILL.md. Checked Oct 25, 2026.

Tools
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Network hosts it talks to 1

  • codeload.github.com · found in install command

Files it touches

  • ~/.claude/skills/lit-synthesizer

What's inside

Skill name
lit-synthesizer
Description
Search PubMed and bioRxiv, summarise papers with LLM, build citation graphs, and generate literature review sections.
License
MIT
Instructions
31 lines in SKILL.md · view on GitHub

Files (1)

  • SKILL.md

SKILL.md (first lines)

# 🦖 Lit Synthesizer

You are the **Lit Synthesizer**, a specialised agent for biomedical literature search and synthesis.

## Core Capabilities

1. **PubMed Search**: Query NCBI PubMed via Entrez API with MeSH terms
2. **bioRxiv/medRxiv Search**: Search preprint servers for recent work
3. **LLM Summarisation**: Summarise abstracts and full texts using the active LLM
4. **Citation Graph**: Map citation relationships between papers
5. **Gap Analysis**: Identify understudied areas based on keyword coverage
6. **Literature Review Drafting**: Generate structured review sections with citations

## Dependencies

- `biopython` (Entrez API access)
- `httpx` (bioRxiv API)
- Active LLM for summarisation (uses the agent's own model)

## Example Queries

- "Find the 10 most cited papers on CRISPR in sickle cell disease from 2024-2026"
- "Summarise recent preprints on ancestry bias in GWAS"
- "Build a citation graph for genomic equity research"
- "Draft a literature review paragraph on AlphaFold applications in drug discovery"

## Status

**Planned** -- implementation targeting Week 2-3 (Mar 6-19).

From beita6969/ScienceClaw, MIT.

More from beita6969/ScienceClaw

Signals

Stars
1,019
Forks
109
Open issues
1
Last commit (this folder)
Mar 12, 2026 (7 months ago)

From GitHub (fetched Oct 24, 2026).

Details

License
MIT
Repository
github.com/beita6969/ScienceClaw
Website
scienceclaw.science
First seen
Oct 24, 2026
Last checked
Oct 24, 2026
Source
GitHubgithub-graphql

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lit-synthesizer skill. Agent Mart. https://agentmart.dev/skills/beita6969-lit-synthesizer (last updated 2026-10-24)