“Database access”

Use when you want to look up, map, and search for short genetic variants (SNPs, indels) in NCBI's dbSNP database.

Use when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-Tissue Expression) Project across 54…

Search and retrieve preprints from arXiv via the Atom API.

This skill should be used when the user wants to add a database (Postgres, Redis, MySQL, MongoDB), says "add postgres", "add redis", "add database", "connect…

Database security, access control, and data protection

Search OSTI.gov for DOE technical reports on critical minerals, energy, and materials science

Production-safe Postgres evolution with Goose, Kysely, expand/contract, and backfills.

Query NHGRI-EBI GWAS Catalog for SNP-trait associations.

Query the Genome Aggregation Database (gnomAD).

Query PubChem via PUG-REST API/PubChemPy (110M+ compounds).

Query NCBI Gene via E-utilities/Datasets API.

Query the Ensembl database to resolve gene, transcript, and protein IDs, fetch genomic or protein sequences, retrieve gene structures (exons), and get variant…

Read and inspect mittwald mStudio projects, apps, runtimes, databases, domains, mail, backups, files, containers, and access users through SecretRef-backed…

Efficient database search tool for bioRxiv preprint server.

Query ChEMBL's bioactive molecules and drug discovery data.

Efficient database search tool for bioRxiv preprint server.

Identify domains, families, and sites in proteins; find all proteins in a family or sharing a domain; explore species distribution for a domain; annotate…

Database design principles and decision-making.

Retrieve named compounds from PubChem and protein records from UniProt using fixed official API hosts.

Work with MongoDB (document database, BSON documents, aggregation pipelines, Atlas cloud) and PostgreSQL (relational database, SQL queries, psql CLI, pgAdmin).

Query metadata and download data from the PRIDE Archive, EMBL-EBI's proteomics identifications database, via the PRIDE Archive REST API v3.

This skill should be used when the user asks to "optimize SQL queries", "explore database schemas", "generate migration SQL", "analyze query performance", or…

Data and Database Engineer expert in schema design, query optimization, and data pipelines.

Database schema, queries, and optimization