Phở Research Tools

Install

Works with Claude Code, VS Code, Cursor, Windsurf. Read the repository before you give any tool access to your data.

npx agentmarket install connector/thaohienhomes-pho-research-tools

About

No reviews yet. Installed it? Reviews come from verified installers only. How reviews work

Permissions

What this server can do and what it asks for, from its tool list and install config. Checked Oct 25, 2026.

Tools

9 read · 0 write · 0 deleteRead-only

Secrets

None asked for

Install scripts

Nothing to install (hosted)

Runs as

Hosted (remote endpoint)

Tools (9)

As the server listed them on Oct 25, 2026. Descriptions are the server’s own words; hidden characters are shown as [U+…].

• check_retractionsCheck retractionsread-only

  Check DOIs for retractions, expressions of concern and corrections, using Crossref (which includes Retraction Watch data). Status per DOI: retracted, concern, corrected, other_notice, no_notice (nothing on record), not_in_crossref, invalid_doi, rate_limited or lookup_failed (the DOI could not be checked, which is not a clean result). Works for a single paper or a whole reference list. verify_references already includes this check, so use this tool for DOIs that have not just been through verify_references. A DOI the same caller checked in the last hour is answered again at no cost to the allow…

• find_datasetsFind datasetsread-only

  Find open scientific datasets (and optionally models) that fit a research question, check their licences, verify the source papers (DOI, retractions, corrections), and return a citable Research Data Brief with a public share link. Searches DataCite (Zenodo, Figshare, Dryad and other data repositories), the Hugging Face Hub boosted by the Hugging Science curated index, and, for life-science questions, NCBI GEO, CZ CELLxGENE Discover (curated single-cell data) and the CZ CryoET Data Portal (cryo-electron tomography). Each result has a match level, a plain-language licence verdict, the source pap…

• find_evidenceFind evidenceread-only

  Find the strongest published evidence for and against a scientific or medical claim. Searches PubMed (including a pass limited to guidelines, meta-analyses, systematic reviews and randomized trials) and OpenAlex, and returns real papers, each with a PMID or DOI, ordered by level of evidence: guideline, meta-analysis, systematic review, RCT, other trial, observational study, narrative review, case report, then study protocols that have not reported results yet. Each paper comes with the conclusion copied verbatim from its abstract, so you can judge for yourself whether it supports the claim, co…

• find_toolsFind research softwareread-only

  Find research software for a task from the bio.tools registry (ELIXIR), check each tool's licence, verify the paper behind it (DOI, retractions, corrections), label whether it is still maintained, and give the install line. Describe the task (e.g. "cluster single-cell RNA-seq data") and optionally the file format the data is in (e.g. H5AD, FASTQ, VCF); tools that list that format as an input are favoured. Each result has a match level, a plain-language licence verdict, the paper and whether it checks out, a maintenance label (active, idle, stale, archived) read from the linked GitHub repositor…

• format_citationsFormat citationsread-only

  Format references in a citation style (APA 7, MLA 9, Chicago author-date, Harvard, Vancouver, IEEE, AMA) or export them as BibTeX, RIS or CSL-JSON. By default every reference is first verified against Crossref, PubMed and OpenAlex, and verified references are formatted from the database record, so wrong years, pages or author names in the input are corrected. References that could not be verified are formatted exactly as written and flagged in `entries[].warnings`. Returns the bibliography and, for text and html output, the matching in-text citation for each reference.

• prisma_flow_diagramPRISMA 2020 flow diagramread-only

  Draw a PRISMA 2020 flow diagram for a new systematic review from the record counts, as a PNG image plus an SVG and download links. Give the counts you have; screened, sought, assessed and reports-included boxes that follow from others are filled in and marked as derived. Studies included is never derived. The tool checks that the numbers add up (records identified minus removed equals screened, and so on) and returns a warning naming each box that does not, with the value it should have. The diagram always shows the numbers exactly as given. Add `otherMethods` counts to draw the second column …

• screening_logScreening logread-only

  Turn the screening decisions of a systematic review into its PRISMA 2020 counts, flow diagram and screening log. Give one row per record: its title/abstract decision (include or exclude), its full-text decision for records that passed (include, exclude or not_retrieved), and the reason for each exclusion. Every box from "records screened" down is counted from the rows, so the diagram always matches the decisions; full-text exclusions are grouped by reason. Returns the diagram (PNG, SVG, links), the counts, a CSV of every decision for the review appendix, and the problems a reviewer would catch…

• search_papersSearch papersread-only

  Search PubMed and OpenAlex for real papers. Every result carries a DOI or PubMed ID that resolves, so nothing returned can be fabricated. Finds sources for a claim or a topic. Filters: publication year range, open-access only, study types, and the number of results. Retracted papers are left out by default. Preprints are included and marked `preprint: true` (not peer reviewed). Results are ranked by the databases' relevance, alternating between the two sources.

• verify_referencesVerify referencesread-only

  Check every reference in a list against Crossref, PubMed and OpenAlex and report, for each one, whether the paper really exists and whether the details are right. Works on lists written by a person or generated by an AI model. Input: a pasted reference list in any common style (APA, Vancouver, numbered, mixed), BibTeX, RIS, CSL-JSON, or one DOI per line. Each reference gets exactly one status: verified, verified_with_corrections (real paper, some details wrong; corrected metadata included), likely_fabricated (no such paper exists), not_found (could not be confirmed either way), retracted, or a…

Signals

Stars

0

Forks

0

Open issues

1

Last commit

Oct 23, 2026 (7 days ago)

Last release

Oct 23, 2026 (7 days ago)

From GitHub (fetched Oct 24, 2026).

Details

Registry name

io.github.thaohienhomes/pho-research-tools

Version

1.1.0

Auth

Auth not stated

License

MIT

Repository

github.com/thaohienhomes/pho-research-tools

Website

pho.chat/tools/mcp/

First seen

Oct 24, 2026

Last checked

Oct 24, 2026

Source

Official MCP Registrygithub-graphql