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Biolab MCP Server

Auditable MCP server for PubMed, Europe PMC, ClinicalTrials.gov, and bioRxiv/medRxiv queries

Connector by srikarjy · GitHub account verified by the MCP Registry

IndexedMITRemote (HTTP)
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Install

Works with Claude Code, VS Code, Cursor, Windsurf. Read the repository before you give any tool access to your data.

npx agentmarket install connector/srikarjy-biolab-mcp-server

Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.

Remote endpoint

  • https://srikarjy025-biolab-mcp.hf.space/mcp Remote (HTTP)

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About

Auditable MCP server for PubMed, Europe PMC, ClinicalTrials.gov, and bioRxiv/medRxiv queries

Reviews

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Permissions

What this server can do and what it asks for, from its tool list and install config. Checked Oct 25, 2026.

Tools
15 read · 15 write · 0 delete
Secrets
None asked for
Install scripts
Nothing to install (hosted)
Runs as
Hosted (remote endpoint)

Tools by what they do 30

From the running server's own tool list (tools/list) on Oct 25, 2026.

Read 15 · Look things up without changing anything.

  • fetch
  • get_artifact
  • get_evidence_collection
  • get_execution
  • get_project_report
  • get_retrieval
  • list_evidence_collections
  • list_evidence_events
  • list_evidence_watches
  • list_execution_tools
  • list_executions
  • list_projects
Show 3 more tools
  • replay_execution
  • trace_claim
  • verify_executions

Write 15 · Create, change, send or run things.

  • add_evidence_to_collection
  • create_claim
  • create_evidence_collection
  • create_evidence_watch
  • create_project
  • link_claim_evidence
  • run_all_evidence_watches
  • run_evidence_watch
  • run_tool
  • search
  • search_biorxiv
  • search_clinicaltrials
Show 3 more tools
  • search_europepmc
  • search_evidence
  • search_pubmed

Network hosts it talks to 1

  • srikarjy025-biolab-mcp.hf.space · found in remote endpoint, install command

Files it touches

  • Any path the agent passes to its tools

Tools (30)

As the server listed them on Oct 25, 2026. Descriptions are the server’s own words; hidden characters are shown as [U+…].

  • add_evidence_to_collection

    Add or update a retrieval in a scientist-reviewed evidence collection.

  • create_claim

    Create a scientific claim record without asserting that it is true.

  • create_evidence_collection

    Create a reviewed evidence collection in a project.

  • create_evidence_watch

    Create a saved query for explicit evidence-change monitoring.

  • create_project

    Create a persistent scientist research project.

  • fetchread-only

    Fetch one preserved evidence record by retrieval ID.

  • get_artifactread-only

    Fetch an output artifact by its sha256 (text only; capped in size).

  • get_evidence_collectionread-only

    Return a collection and its reviewed evidence items.

  • get_executionread-only

    Fetch one execution record, including output artifact hashes.

  • get_project_reportread-only

    Return collections, claims, evidence links, watches, and events for a project.

  • get_retrievalread-only

    Retrieve a full retrieval record by its retrieval_id. Args: retrieval_id: the UUID returned by search_pubmed

  • link_claim_evidence

    Propose or record how one retrieval relates to a claim.

  • list_evidence_collectionsread-only

    List evidence collections, optionally within one project.

  • list_evidence_eventsread-only

    List change events previously detected by an evidence watch.

  • list_evidence_watchesread-only

    List saved evidence watches, optionally within one project.

Show 15 more tools
  • list_execution_toolsread-only

    List runnable tools with their pinned versions, containers and devices.

  • list_executionsread-only

    List recent execution records, newest first.

  • list_projectsread-only

    List scientist research projects.

  • replay_executionread-only

    Re-run a recorded execution and report whether its outputs reproduced. Writes nothing.

  • run_all_evidence_watches

    Run all active watches and return explicit per-watch failures.

  • run_evidence_watch

    Run one evidence watch and record added, removed, or revised evidence.

  • run_tool

    Run a registered tool and seal an ExecutionRecord (inputs, versions, output hashes). Args: tool: tool name from list_execution_tools inputs: tool inputs (JSON object); stored verbatim so the run can be replayed agent_id: calling agent or workflow identity retrieval_ids: evidence retrievals this run was derived from, for provenance links

  • search

    Search all evidence sources for ChatGPT/Codex knowledge compatibility.

  • search_biorxiv

    List bioRxiv/medRxiv preprints by category and log each to the audit trail. No free-text search exists on this API — only category listing (last 30 days). Args: category: category, e.g. "neuroscience", "bioinformatics", or "all" agent_id: which agent is asking, e.g. "aletheia:advocate" max_results: how many preprints to retrieve (default 5) server: "biorxiv" or "medrxiv" (default "biorxiv")

  • search_clinicaltrials

    Search ClinicalTrials.gov and log every retrieved study to the audit trail. Args: query: condition/disease search string, sent to ClinicalTrials.gov verbatim agent_id: which agent is asking, e.g. "aletheia:advocate" max_results: how many studies to retrieve (default 5)

  • search_europepmc

    Search Europe PMC and log every retrieved article to the audit trail. Args: query: exact search string, sent to Europe PMC verbatim — no normalization agent_id: which agent is asking, e.g. "aletheia:advocate" max_results: how many articles to retrieve (default 5)

  • search_evidence

    Search several scientific sources in one explicitly audited workflow. Args: query: scientific evidence query sent to each selected source agent_id: calling agent or workflow identity sources: any of pubmed, europepmc, clinicaltrials, uniprot, opentargets max_results: maximum results to preserve per source (1-50)

  • search_pubmed

    Search PubMed and log every retrieved paper to the audit trail. Args: query: exact search string, sent to PubMed verbatim — no normalization agent_id: which agent is asking, e.g. "aletheia:advocate" max_results: how many papers to retrieve (default 5)

  • trace_claimread-only

    Trace a claim to supporting, conflicting, contextual, or insufficient evidence.

  • verify_executionsread-only

    Verify the execution hash chain and that every output artifact is intact.

Signals

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Last commit
Oct 10, 2026 (20 days ago)
Last release
Oct 2, 2026 (27 days ago)

From GitHub (fetched Oct 24, 2026).

Details

Registry name
io.github.srikarjy/biolab-mcp-server
Version
0.3.0
Auth
Auth not stated
License
MIT
Repository
github.com/srikarjy/biolab-mcp-server
Website
huggingface.co/spaces/srikarjy025/biolab-mcp
First seen
Oct 24, 2026
Last checked
Oct 24, 2026
Source
Official MCP Registrygithub-graphql
Cite this page

Biolab MCP Server. Agent Mart. https://agentmart.dev/connectors/srikarjy-biolab-mcp-server (last updated 2026-10-24)