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Genomics MCP

Bounded genomic data from archives and indexed files, with versioned reference evidence.

Connector by rewire-bio · GitHub account verified by the MCP Registry

IndexedMITLocal (stdio)★ 3
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Install

Works with Claude Code, Codex, VS Code, Claude Desktop, Cursor, Windsurf. Read the repository before you give any tool access to your data.

npx agentmarket install connector/rewire-bio-genomics-mcp

Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.

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About

Bounded genomic data from archives and indexed files, with versioned reference evidence.

Reviews

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Permissions

What this server can do and what it asks for, from its install config and code. Checked Oct 25, 2026.

Tools
No tools found
Secrets
None asked for
Install scripts
None found
Runs as
Docker image

Network hosts it talks to 32

  • alphagenome.google · found in code
  • alphagenomedocs.com · found in code
  • api.ncbi.nlm.nih.gov · found in code
  • api.platform.opentargets.org · found in code
  • ebi.ac.uk · found in code
  • ega-archive.org · found in code
  • ega.ebi.ac.uk · found in code
  • encode-public.s3.amazonaws.com · found in code
  • encodeproject.org · found in code
  • ensembl.org · found in code
  • eutils.ncbi.nlm.nih.gov · found in code
  • ftp.ncbi.nlm.nih.gov · found in code
  • genenames.org · found in code
  • github.com · found in install command, code
  • glama.ai · found in code
  • gnomad.broadinstitute.org · found in code
  • grch37.rest.ensembl.org · found in code
  • lobehub.com · found in code
  • mcpmarket.com · found in code
  • mcpservers.org · found in code
  • metadata.ega-archive.org · found in code
  • ncbi.nlm.nih.gov · found in code
  • platform-docs.opentargets.org · found in code
  • platform.opentargets.org · found in code
  • raw.githubusercontent.com · found in code
  • reddit.com · found in code
  • rest.ensembl.org · found in code
  • rest.genenames.org · found in code
  • rest.uniprot.org · found in code
  • s3.amazonaws.com · found in code
Show 2 more hosts
  • smithery.ai · found in code
  • uniprot.org · found in code

Files it touches

  • ~/.aws
  • /opt/sratoolkit/bin/fasterq-dump
  • /opt/sratoolkit/bin/prefetch
  • /tmp/gm-clean/bin/genomics-mcp
  • Your home directory (~)
  • ~/.cache/genomics-mcp
  • ~/.config/genomics-mcp/token
  • ~/Documents/projects/personal/genomics-mcp-sra-toolkit/build/independent-review-20261001/clean-venv/bin/genomics-mcp
  • ~/genomics/data

Signals

Stars
3
Forks
0
Open issues
1
Last commit
Oct 2, 2026 (28 days ago)
Last release
Sep 25, 2026 (1 month ago)

From GitHub (fetched Oct 24, 2026).

Details

Registry name
io.github.rewire-bio/genomics-mcp
Version
0.1.0
Auth
No auth
Packages
oci ghcr.io/rewire-bio/genomics-mcp:0.1.0mcpb https://github.com/rewire-bio/genomics-mcp/releases/download/v0.1.0/genomics-mcp-0.1.0.mcpb
License
MIT
Repository
github.com/rewire-bio/genomics-mcp
Website
github.com/rewire-bio/genomics-mcp#readme
First seen
Oct 24, 2026
Last checked
Oct 24, 2026
Source
Official MCP Registrygithub-graphql
Cite this page

Genomics MCP. Agent Mart. https://agentmart.dev/connectors/rewire-bio-genomics-mcp (last updated 2026-10-24)