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Reactome

Reactome MCP — open biological pathway knowledge-base.

Connector by pipeworx-io · GitHub account verified by the MCP Registry

IndexedMITRemote (HTTP)
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Install

Works with Claude Code, VS Code, Cursor, Windsurf. Read the repository before you give any tool access to your data.

npx agentmarket install connector/pipeworx-io-reactome

Asks which of your tools to add it to (Claude Code, Codex, Cursor, VS Code, Windsurf, Gemini CLI, Claude Desktop) and shows the change first. See https://agentmart.dev/cli.

Remote endpoint

  • https://gateway.pipeworx.io/reactome/mcp Remote (HTTP)

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About

Reactome MCP — open biological pathway knowledge-base.

Reviews

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No reviews yet. Installed it? Reviews come from verified installers only. How reviews work

Permissions

What this server can do and what it asks for, from its tool list and install config. Checked Oct 25, 2026.

Tools
1 read · 0 write · 0 delete · 4 not yet classified
Secrets
None asked for
Install scripts
Nothing to install (hosted)
Runs as
Hosted (remote endpoint)

Tools by what they do 5

Read from the source code; the running server may list different tools.

Read 1 · Look things up without changing anything.

  • search

Not yet classified 4 · We could not tell from the name and description.

  • orthologous_events
  • participants
  • pathway
  • pathways_for_entity

Network hosts it talks to 1

  • gateway.pipeworx.io · found in remote endpoint, install command

Tools (5)

Read from the source code; the running server may differ. Descriptions are the server’s own words; hidden characters are shown as [U+…].

  • orthologous_events

    Orthologous pathways/reactions in another species.

  • participants

    Entity participants of a pathway.

  • pathway

    Full pathway record by stable id (e.g. R-HSA-68886).

  • pathways_for_entity

    Pathways containing an entity, looked up by external resource id (e.g. UniProt accession).

  • search

    Search the Reactome biological pathway database by keyword across all object types (Pathway, Reaction, Protein, Complex, etc.); returns stable IDs and display names grouped by type.

Signals

Stars
0
Forks
0
Open issues
0
Last commit
Sep 26, 2026 (1 month ago)
Last release
Sep 26, 2026 (1 month ago)

From GitHub (fetched Oct 24, 2026).

Details

Registry name
io.github.pipeworx-io/reactome
Version
0.1.2
Auth
Auth not stated
License
MIT
Repository
github.com/pipeworx-io/mcp-reactome
Website
pipeworx.io/packs/reactome
First seen
Oct 24, 2026
Last checked
Oct 24, 2026
Source
Official MCP Registrygithub-graphql

More from pipeworx-io

Cite this page

Reactome MCP server. Agent Mart. https://agentmart.dev/connectors/pipeworx-io-reactome (last updated 2026-10-24)