Pharmacogenomics Guidelines MCP Server

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Works with Claude Code, Codex, VS Code, Cursor, Windsurf, Claude Desktop. Read the repository before you give any tool access to your data.

npx agentmarket install connector/cyanheads-pharmacogenomics-guidelines-mcp-server

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Permissions

What this server can do and what it asks for, from its tool list and install config. Checked Oct 25, 2026.

Tools

6 read · 0 write · 0 deleteRead-only

Secrets

None asked for

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Runs as

Node.js package

Tools (6)

Read from the source code; the running server may differ. Descriptions are the server’s own words; hidden characters are shown as [U+…].

• pgx_get_guidelineGet guideline coverageread-only

  Retrieve guideline coverage by source ID, exact gene symbol or exact drug name/ID. Default summary pages complete guideline records with exact drugCount/pairCount. view=drugs or pairs requires by=id and pages only that related collection, retaining its guideline descriptor. Ambiguous drug names page candidates for retry with drugId. Follow page.nextOffset; the 24,000-byte soft budget cuts only between complete rows, with oversizedRow for an indivisible exception. Missing coverage is found=false. Consult linked guidelines before clinical use.

• pgx_get_recommendationsGet recommendationsread-only

  Browse CPIC recommendations in drug mode with one exact drugName or drugId. Match across drugs in results mode with geneResults or geneSymbol plus phenotype/activityScore, or genotype mode with 1–10 uniquely resolved gene/diplotype entries. Both matching modes accept an optional drug. Use pgx_list_reference topic phenotypes for source values. Every matched prerequisite must be explicit; omitted genes are never normal or negative. Preserve populations, scores, classifications and source text. Follow page.nextOffset and incompletePage.nextOffset independently; consult linked guidelines before cl…

• pgx_list_referenceList pharmacogenomics reference valuesread-only

  Inspect gene symbols, gene-specific source results, CPIC levels, ClinPGx testing labels, recommendation classifications and input formats. phenotypes requires geneSymbol and preserves distinct activity-score rows, frequencies and consultation text. Live genes/phenotypes support paging; static topics return their complete vocabulary without upstream requests. Use returned values in subsequent discovery, diplotype and recommendation calls.

• pgx_lookup_diplotypeLook up diplotyperead-only

  Translate a CPIC-supported diplotype or allele-status result for one gene. Supply geneSymbol and exact diplotype notation, including star alleles, named HLA positive/negative statuses, or non-star sequences; use pgx_search_alleles and pgx_list_reference with topic phenotypes to inspect supported values. Exact lookup precedes bounded reverse-order or status aliases. Multiple source rows remain ambiguous; no activity score or missing gene result is inferred.

• pgx_search_allelesSearch allelesread-only

  Inspect CPIC allele function, evidence, definition metadata and complete population frequencies for geneSymbol. Name matches literally first, then a matching gene prefix before a star allele may be removed; clinicalFunctionalStatus matches literal text case-insensitively. Discover genes with pgx_list_reference. Definitions are metadata, not variant interpretation. Frequencies are source fractions; inferred frequencies are not observations and do not establish individual risk. Pages have a 24,000-byte complete-result soft budget; an indivisible exception sets oversizedRow. Continue with page.ne…

• pgx_search_pairsSearch evaluated gene–drug pairsread-only

  Search evaluated gene–drug pairs by gene, literal drug-name substring, exact drug/RxNorm/ATC identifiers, evaluation level or testing label. Filters combine with AND; identifiers never fall back to name-only search. Results include source drug identifiers and guideline links for pgx_get_guideline. A pair evaluation is not a prescribing recommendation. Follow nextOffset to continue.

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Weekly downloads

18

Last commit

Oct 20, 2026 (10 days ago)

Last release

Oct 20, 2026 (10 days ago)

Last package publish

Oct 20, 2026 (10 days ago)

From GitHub (fetched Oct 24, 2026) and the package registry.

Details

Registry name

io.github.cyanheads/pharmacogenomics-guidelines-mcp-server

Version

0.2.0

Auth

No auth

Packages

npm @cyanheads/pharmacogenomics-guidelines-mcp-servernpm @cyanheads/pharmacogenomics-guidelines-mcp-server

License

Apache-2.0

Repository

github.com/cyanheads/pharmacogenomics-guidelines-mcp-server

First seen

Oct 24, 2026

Last checked

Oct 24, 2026

Source

Official MCP Registrygithub-graphql